Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq504 118 1e-21 >seq504 Length=220221 Score = 118 bits (130), Expect = 1e-21 Identities = 183/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 138162 AATGGTGTGAGATGTT--TTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCAT 138219 ||||||| |||||| ||| |||||||| ||||| || || ||||||||||| |||| Sbjct 96152 AATGGTGCAAGATGTGACTTG--ACACCAATTGGACCAACTCCTGGACCTCCACCCCCAT 96095 Query 138220 GTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATG 138279 | |||||||| |||||||| || | || |||||||| ||||| || ||| |||| | Sbjct 96094 GAGGAATACAAAATGTCTTGTGAAGGTTGAGATGACAGACATCAGCCCCAATCTCACCAG 96035 Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339 || | || | || || || | ||| |||||||| | || || || || |||| Sbjct 96034 GTGAGCACAATCCAATTTGAGCGTTCATATTCGCACCATCCATGTAAACTTGTCCTCCAT 95975 Query 138340 TGTCATGAACGATCTTACATATCTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGAT 138398 || ||||| | || || | ||| | ||| | | ||||| |||||| || ||| Sbjct 95974 GCTCGTGAACCAACTCGCA-AACTGCCTTGACTTCAGGCTCAAAGACACCAAAGGTAGAT 95916 Query 138399 GGATATGTAATCATAAT 138415 || ||||||||||| || Sbjct 95915 GGGTATGTAATCATGAT 95899 Score = 113 bits (124), Expect = 5e-20 Identities = 199/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || || |||| || ||||| | |||||||| || ||||||||| || ||||| ||| Sbjct 94979 AGACCCTCTGGGCCGTGATAGACAGCATAGAAAGCACTCATATTTGCAAGTAGTGCCTGT 94920 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 |||||||| | || || ||||| || ||||||| ||||| ||||||| || || ||| Sbjct 94919 GCTGTGCATACATTGCTAGTTGCCTTTTCTCTTCGGATATGTTGCTCTCGGGTCTGAAGT 94860 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCT----GTCCA-CTGACTGACCTACAAT---TC 139431 || ||||| || ||||| || ||| | || | | || |||| | Sbjct 94859 GCCAATCT--------CATCGCCTTGTCTCCAAGTCTATCTTTCGAAACTCCAATGAGGC 94808 Query 139432 TGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTC 139491 || || || || | |||||| ||||| | || ||||| |||||||||||||| | Sbjct 94807 GTCCTGGGATTTTCCGCTTATATTTGTCGCTAACGGCGAAGAAAGCAGCATGAGGACCAC 94748 Query 139492 CGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | ||||| | ||||| ||| || | ||| |||| | |||||||| Sbjct 94747 CATATCCAAAAGGAACACCGAATCGTTGGGCGTTACCAAATGCAATATC 94699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994752310080