Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq504 118 1e-21
>seq504
Length=220221
Score = 118 bits (130), Expect = 1e-21
Identities = 183/257 (71%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 138162 AATGGTGTGAGATGTT--TTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCAT 138219
||||||| |||||| ||| |||||||| ||||| || || ||||||||||| ||||
Sbjct 96152 AATGGTGCAAGATGTGACTTG--ACACCAATTGGACCAACTCCTGGACCTCCACCCCCAT 96095
Query 138220 GTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATG 138279
| |||||||| |||||||| || | || |||||||| ||||| || ||| |||| |
Sbjct 96094 GAGGAATACAAAATGTCTTGTGAAGGTTGAGATGACAGACATCAGCCCCAATCTCACCAG 96035
Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339
|| | || | || || || | ||| |||||||| | || || || || ||||
Sbjct 96034 GTGAGCACAATCCAATTTGAGCGTTCATATTCGCACCATCCATGTAAACTTGTCCTCCAT 95975
Query 138340 TGTCATGAACGATCTTACATATCTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGAT 138398
|| ||||| | || || | ||| | ||| | | ||||| |||||| || |||
Sbjct 95974 GCTCGTGAACCAACTCGCA-AACTGCCTTGACTTCAGGCTCAAAGACACCAAAGGTAGAT 95916
Query 138399 GGATATGTAATCATAAT 138415
|| ||||||||||| ||
Sbjct 95915 GGGTATGTAATCATGAT 95899
Score = 113 bits (124), Expect = 5e-20
Identities = 199/289 (69%), Gaps = 16/289 (6%)
Strand=Plus/Minus
Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319
|| || |||| || ||||| | |||||||| || ||||||||| || ||||| |||
Sbjct 94979 AGACCCTCTGGGCCGTGATAGACAGCATAGAAAGCACTCATATTTGCAAGTAGTGCCTGT 94920
Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379
|||||||| | || || ||||| || ||||||| ||||| ||||||| || || |||
Sbjct 94919 GCTGTGCATACATTGCTAGTTGCCTTTTCTCTTCGGATATGTTGCTCTCGGGTCTGAAGT 94860
Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCT----GTCCA-CTGACTGACCTACAAT---TC 139431
|| ||||| || ||||| || ||| | || | | || |||| |
Sbjct 94859 GCCAATCT--------CATCGCCTTGTCTCCAAGTCTATCTTTCGAAACTCCAATGAGGC 94808
Query 139432 TGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTC 139491
|| || || || | |||||| ||||| | || ||||| |||||||||||||| |
Sbjct 94807 GTCCTGGGATTTTCCGCTTATATTTGTCGCTAACGGCGAAGAAAGCAGCATGAGGACCAC 94748
Query 139492 CGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540
| ||||| | ||||| ||| || | ||| |||| | ||||||||
Sbjct 94747 CATATCCAAAAGGAACACCGAATCGTTGGGCGTTACCAAATGCAATATC 94699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578994752310080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |