Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq104 257 2e-63 seq476 120 4e-22 seq222 111 2e-19 seq311 91.5 2e-13 >seq104 Length=83277 Score = 257 bits (284), Expect = 2e-63 Identities = 1208/1881 (64%), Gaps = 68/1881 (4%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||| ||||| ||| || | ||||| | || |||||||||| || Sbjct 48568 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGGCAAGATCTG 48510 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| | ||||| || || |||| |||||||| || || || || Sbjct 48509 TGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGA 48450 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | ||||| ||| || ||||||| ||| || |||| ||||| | || Sbjct 48449 GGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCCCCC 48392 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||| |||||||||||| | || | || ||||||||||||| || Sbjct 48391 ACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 48332 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| || | |||||||| | || | | ||||| || |||||| Sbjct 48331 AAGGAGGACAGCATTGATGGTATCTACGACACATTGAAAATTTGTGCCATGATTTCAAAG 48272 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| ||||| || | | | || | | || | || |||| | Sbjct 48271 AACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACGGGTGCTTATATTGCG 48212 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | || ||| |||| |||||||| || || ||| ||| || Sbjct 48211 GGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCT 48152 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616 | ||||| |||||| || | |||| | || | | ||| ||||| | || Sbjct 48151 AGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAG 48095 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| || ||| | | ||||||||||| | ||| ||||| || | || ||| Sbjct 48094 CCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAG 48035 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | ||| | |||||||| | | || ||||| ||||| || ||||||||||| ||| Sbjct 48034 GTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTT 47975 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || | | ||| | | | || || || || || || | |||||| Sbjct 47974 GAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCGACGTC 47915 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTAC-ACAAA-----GTATGAAGAGGAGGGTAGAGCC 75850 ||||| ||||| || || | || | ||| || ||||| ||||| | | Sbjct 47914 TACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTCG---C 47858 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 || || | |||| | ||||| | |||| || | | ||||| ||||| Sbjct 47857 AA---GAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACC 47801 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 |||| || | |||||||||||||||||||| ||| |||||||||||||||||| | Sbjct 47800 GGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTC 47741 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||| ||||| || | ||||| || ||| | |||||| | |||||| Sbjct 47740 GGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTACTGTGCACCAGATGAG 47681 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090 |||||||||||||||||||| | || || |||| ||||| | || ||||| | Sbjct 47680 GTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGACGAGAAGACTGCC 47621 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCG 76149 |||| ||| | |||| || || || || | ||| | || ||| || | || Sbjct 47620 ACTTATGACTTCCAAAAGCTCCACGAGGTCTGCCAAG-TAGTCGTCAAGAACTTGAATAA 47562 Query 76150 AGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 | || || || | ||| || || |||| || ||||| ||| | || || Sbjct 47561 GATTATCGATGTCAACTATTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCA 47505 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCTACG 76265 ||||||||||| | | |||||||||||||| || |||| || | | | | || | Sbjct 47504 CAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGCCTTC- 47446 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | || || || ||||||||| | | || | ||||| |||||||| || |||| Sbjct 47445 CTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTACCACG 47386 Query 76326 CATCCCTGGAGGCGAGTT--GT-GAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | | | | || | || || || ||||| || || ||| | |||||||||| Sbjct 47385 C-TGCTTTGA--CTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGACATACC 47329 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-- 76440 | || || || || ||| | || | ||| || | ||| ||||||| || | ||| | Sbjct 47328 AAGGCTCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCTACC 47270 Query 76441 GCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | || | || |||| | | ||| ||| || | | || | || ||||| Sbjct 47269 GATC-TTTGGGATTGGGCTAGCTTGAAGCAACAGATTGCTCAACACGGCATCCGCAACAG 47211 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 | | | | || || |||||||| ||| ||| || || | ||| || || || Sbjct 47210 TTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAACGAGTG 47151 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 ||| || ||||| || | ||||| || || | ||| || || ||||| | Sbjct 47150 CTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTTCCAGGT 47091 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 ||||||| || | || || || | || || ||||||||| | | ||||| Sbjct 47090 TGTCAACCCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACATGAA 47031 Query 76681 GGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATG 76736 | | | ||| || ||| ||||| || || |||||| | || |||| |||| || Sbjct 47030 GAACCGTATCATTGCTGA----CGGTGGATCAATCCAAAATGTTCCAAATATTCCAGCTG 46975 Query 76737 ATATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACAT 76794 |||||||| ||| ||| || || ||||| | ||| | | | | || | | || Sbjct 46974 ATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCCAGAT 46917 Query 76795 GGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAG 76854 ||| || || |||||| |||||||||||| |||| ||||| | |||| | Sbjct 46916 GGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGA 46857 Query 76855 TCCAACGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAACAGGGGCTCAAAA 76913 ||||| ||| ||| || | ||||||| | | | || ||||| | ||| ||||| | Sbjct 46856 CCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGC-TGGAAGCTGGGTCTCAAGA 46798 Query 76914 CCGGAATGTACTATCTCCGATCAAAGGCGAAAGCC-CG--ACCAATTCAGTTCAGCCTTG 76970 | ||||||||||||||||| | | ||| ||| || ||| || ||||||| | ||| Sbjct 46797 CTGGAATGTACTATCTCCGTACTATGGC---TGCCTCGGCACCTATCCAGTTCACCGTTG 46741 Query 76971 AACCCGAGTGTGTCGCTTGTT 76991 | | ||| | || |||||| Sbjct 46740 ATCAAGAGGCTCTC-CTTGTT 46721 >seq476 Length=308794 Score = 120 bits (132), Expect = 4e-22 Identities = 296/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| || | || ||| |||| ||||| ||| ||||||||||||||| || || | Sbjct 12537 CCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTT 12478 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | |||||||||||||| || |||||| | || || |||||| || | Sbjct 12477 TCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 12418 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTT----TGCCGTGGAGCTCTTCAAG 65244 | | || ||||| ||||||||||||||| || || |||| | |||||| Sbjct 12417 AGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTT----CTCTTCTCT 12362 Query 65245 ACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 ||| || | || | | | | | |||| ||| || | | ||||| |||||| Sbjct 12361 CACTTGAAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAG 12302 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAG 65364 |||||| ||| |||| | || || || || ||| ||| | || |||||| | | Sbjct 12301 ATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAAC 12242 Query 65365 AAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCC 65423 |||| | |||||||||| || | |||||||||||| | || || Sbjct 12241 TTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAATGAG 12182 Query 65424 ACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | ||| || | || ||||| ||||||||||| ||||| |||| || || Sbjct 12181 A-AGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGGAAA 12123 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTG 65509 ||| |||||||| |||||||| |||| Sbjct 12122 GACTAACTTCTTCGAGAAGCGTGTTG 12097 >seq222 Length=1012068 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || ||||| |||||||| ||| | || | ||| || ||||| || |||||| | Sbjct 850812 GGAGCTAAGATTCCCCGAGGAGCCATCCTTTCTGGTCCACCCGGTACTGGTAAGACCTTA 850753 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTC-TGCCGCAAA 175394 || || |||| || || || || ||| || ||| || || | | || | | Sbjct 850752 CTAGCAAAGGCCACAGCCGGAGAGTCGGGTGTGCCTTTCTTC-AGCGTTAGTGGTTCCGA 850694 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || |||||||||||||||||||| ||||| || ||||| |||||||||| ||| || Sbjct 850693 GTTCGTGGAGATGTTTGTTGGTGTTGGTGCTTCCAGAGTTCGAGATCTCTTTGCAATGGC 850634 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | | | ||| || |||||| ||||||||||||| |||||||| Sbjct 850633 CAGAAAGAATACCCCTTGTATTATCTTCATTGATGAAATTGATGC 850589 >seq311 Length=439650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920 ||| | ||| | |||||| | ||||| || | ||| |||||||| ||||| || ||||| Sbjct 349015 CTCCAAGACCAATTGTGCTACACGATCTCCCTCCTTGACCTCAAAATCTTTCTCGCCGTG 348956 Query 27921 ATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCA 27978 ||||||||| | ||||||||||| || ||||||| |||||| || || || ||| Sbjct 348955 ATTGAAGAGGAGGACTTTGACTTGGCCACGGTAGTCGGCATCAATTACGCCTGCGCCA 348898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565841611520