Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq104 143 8e-29 seq69 102 2e-16 seq345 100 8e-16 seq24 96.9 1e-14 seq101 86.0 2e-11 >seq104 Length=83277 Score = 143 bits (158), Expect = 8e-29 Identities = 581/909 (64%), Gaps = 15/909 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||||||| ||||| ||| || || |||||| || | |||||| ||||| Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || | ||| |||||||||||||| || ||| | ||| |||| ||||| |||| || Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | |||| || || |||| ||||||| || Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGA 47875 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| |||||| ||||| | | | || |||||||| || || |||||| || Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | || | ||| || || || | ||||||| ||| || | Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTC---AACACGCTTCATGAAGAG 47992 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | ||| ||||| || || | || |||||| | ||||| || Sbjct 47993 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 48052 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || || ||| | || |||||| || || || || || Sbjct 48053 CTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAA 48112 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | |||| | |||| ||||| ||||| ||||| | ||| || || ||||| || | Sbjct 48113 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCG 48172 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| |||| ||| || ||||| | || || || || ||||| | ||| | | Sbjct 48173 AAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGC 48232 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | | |||| || || || |||||||| | || ||||| || || Sbjct 48233 ACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAAT 48292 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCAC 156281 || | || | | | ||||| ||||| || || | || | |||| || |||| Sbjct 48293 TTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATA--AGGAAGCAG 48350 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || | ||| | ||||||| ||||| ||| ||||| || | || || | || Sbjct 48351 GATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401 || || | ||||| | | ||| ||||| | ||| | || ||||| || Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATT 48470 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA-ATCACTCCATCAATTCG 156460 | || || || | ||| |||||| || ||||| || ||| ||| ||||| | || Sbjct 48471 CCGACAGCAACGCGCATAATCATATGTTGTGGACGTTC-ACAGATCTTGCCATCGAGGCG 48529 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTT 156520 || || |||| || || || || || || ||||| || | | |||||||||| Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCACGGTC 48589 Query 156521 GTAATCAAT 156529 ||| |||| Sbjct 48590 GTAGACAAT 48598 >seq69 Length=122297 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 |||| || | |||||| | ||||||||||||||| || || | ||||| ||||||||| Sbjct 15091 TAGCCCCATAAGCAATAAGACAATCACGTTCCATCTCTCCCAAACGCAAACCACCATCTC 15032 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 || ||||||| | | |||||| || | | || || ||||| ||| |||| | | Sbjct 15031 GCGATCTACCCTCGGTAGGTTGACGTGTAAGGATAGCTCGCGGACCGCGAGAACGAGAGT 14972 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGT 233419 |||||||||| |||||||||||| ||| Sbjct 14971 GCATTTTATCTTGAACCATATGCTTGAGT 14943 Score = 84.2 bits (92), Expect = 6e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||| | ||||||||| ||||| || || ||||| | ||||||||| || | |||||||| Sbjct 15078 AATAAGACAATCACGTTCCATCTCTCCCAAACGCAAACCACCATCTCGCGATCTACCCTC 15019 Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615 || ||| ||||| || || || | |||||| || || || ||||| | Sbjct 15018 GGTAGGTTGACGTGTAAGGATAGCTCGCGGACCGCGAGAACGAGAGTGCATTTTATCTTG 14959 Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 |||||||||||||| |||||| | ||| |||| ||||||| Sbjct 14958 AACCATATGCTTGAGTTTTTGGTAGTAGATGGGTCCGAAGAAGATG 14913 >seq345 Length=432923 Score = 100 bits (110), Expect = 8e-16 Identities = 214/318 (67%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || |||| |||||||||||||| | | || || ||| | ||| ||| Sbjct 172095 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTTCCCTTGGCAGCAGCA 172036 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||||||| | || || ||| || | |||||| || | || | |||||||| | Sbjct 172035 AATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCCA 171976 Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | |||| ||||| || ||||| || || || || | || | ||| |||| Sbjct 171975 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCGGCAACCGCTCGTGCTAAAAGAGTCT 171918 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || ||||| || || |||| || ||||||||||| | ||| | ||| || Sbjct 171917 TTCCAGTACCAGGAGGACCAACTAAAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTAG 171858 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 | | || ||||| |||| | ||||| || | || | |||||| | ||||||||| | Sbjct 171857 AAAACTTTTCAGGATTCTTGAGGAATTCCACGAGATCTTGAAGTTCTTCTTTTGCCTCGT 171798 Query 289328 CACATCCTGCTACATCAG 289345 | || || ||||||| Sbjct 171797 CGCAACCATGGACATCAG 171780 >seq24 Length=734891 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| || ||||||||||||||| || || || || || ||||| || || Sbjct 286500 CTTGACAAGACGGCGTTGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAG 286441 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || ||||| || | ||| ||| || ||| | || | | Sbjct 286440 ACCTTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGAAGATA 286381 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | ||||| || || | | || || || | || ||| || || || || || Sbjct 286380 TGAGTTTTCAACAAATCCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAG 286321 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || | ||||| | || ||||||||||| || || ||||| || | | Sbjct 286320 TGTTCGGTATTTGAAGCCGAAAGGAATACGCTTTCCTTCCACAGATTGCTGACCAACGAG 286261 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | ||||||| || ||||| Sbjct 286260 CGCAGTCATCTGAGAGATATT 286240 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || |||||| |||| ||||| ||| || | ||||| ||| Sbjct 287291 AGAATTTCTTTTAGACGAGGCACACCAAGGGTGACGTT---CTTCGAAGACACACCTGCA 287235 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||||||||| || || | ||| || | || || |||||| ||| || |||| Sbjct 287234 AAATGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAGCAGCAAGG 287175 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||||| || Sbjct 287174 ACTCCAACCATTTCTCCAGG 287155 >seq101 Length=641113 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| |||||||| |||||||||||||| | || ||| | Sbjct 354204 TGAGCAATTGTCATACGAGACGGAATAGCGTGGGGATTGATGATAAGATCCGGTACGATG 354263 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTTT 251955 || | |||||| ||||| |||| || || ||| | | || ||||| ||||| Sbjct 354264 CCCTGGCAAGTGAAAGGCATGTCCT---CCATTCTATACGTAATACCGATAGTACCCTTC 354320 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||| |||||||| Sbjct 354321 TGTCCGTGACGAGAAGCGAACTTGTCACCAAT 354352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808095737848