Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq104 143 8e-29
seq69 102 2e-16
seq345 100 8e-16
seq24 96.9 1e-14
seq101 86.0 2e-11
>seq104
Length=83277
Score = 143 bits (158), Expect = 8e-29
Identities = 581/909 (64%), Gaps = 15/909 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||||||| ||||| ||| || || |||||| || | |||||| |||||
Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || | ||| |||||||||||||| || ||| | ||| |||| ||||| |||| ||
Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| || || ||| || | |||| || || |||| ||||||| ||
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGA 47875
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| |||||| ||||| | | | || |||||||| || || |||||| ||
Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935
Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926
|| | |||||| | || | ||| || || || | ||||||| ||| || |
Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTC---AACACGCTTCATGAAGAG 47992
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | ||| ||||| || || | || |||||| | ||||| ||
Sbjct 47993 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 48052
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || || ||| | || |||||| || || || || ||
Sbjct 48053 CTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAA 48112
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| |||| | |||| ||||| ||||| ||||| | ||| || || ||||| || |
Sbjct 48113 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCG 48172
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| |||| ||| || ||||| | || || || || ||||| | ||| | |
Sbjct 48173 AAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGC 48232
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223
|| | | |||| || || || |||||||| | || ||||| || ||
Sbjct 48233 ACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAAT 48292
Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCAC 156281
|| | || | | | ||||| ||||| || || | || | |||| || ||||
Sbjct 48293 TTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATA--AGGAAGCAG 48350
Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341
|| | ||| | ||||||| ||||| ||| ||||| || | || || | ||
Sbjct 48351 GATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410
Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATA 156401
|| || | ||||| | | ||| ||||| | ||| | || ||||| ||
Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATT 48470
Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA-ATCACTCCATCAATTCG 156460
| || || || | ||| |||||| || ||||| || ||| ||| ||||| | ||
Sbjct 48471 CCGACAGCAACGCGCATAATCATATGTTGTGGACGTTC-ACAGATCTTGCCATCGAGGCG 48529
Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTT 156520
|| || |||| || || || || || || ||||| || | | ||||||||||
Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCACGGTC 48589
Query 156521 GTAATCAAT 156529
||| ||||
Sbjct 48590 GTAGACAAT 48598
>seq69
Length=122297
Score = 102 bits (112), Expect = 2e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330
|||| || | |||||| | ||||||||||||||| || || | ||||| |||||||||
Sbjct 15091 TAGCCCCATAAGCAATAAGACAATCACGTTCCATCTCTCCCAAACGCAAACCACCATCTC 15032
Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390
|| ||||||| | | |||||| || | | || || ||||| ||| |||| | |
Sbjct 15031 GCGATCTACCCTCGGTAGGTTGACGTGTAAGGATAGCTCGCGGACCGCGAGAACGAGAGT 14972
Query 233391 TAATTTTATCTTTAACCATATGCTTCAGT 233419
|||||||||| |||||||||||| |||
Sbjct 14971 GCATTTTATCTTGAACCATATGCTTGAGT 14943
Score = 84.2 bits (92), Expect = 6e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 251496 AATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555
||| | ||||||||| ||||| || || ||||| | ||||||||| || | ||||||||
Sbjct 15078 AATAAGACAATCACGTTCCATCTCTCCCAAACGCAAACCACCATCTCGCGATCTACCCTC 15019
Query 251556 GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATT 251615
|| ||| ||||| || || || | |||||| || || || ||||| |
Sbjct 15018 GGTAGGTTGACGTGTAAGGATAGCTCGCGGACCGCGAGAACGAGAGTGCATTTTATCTTG 14959
Query 251616 TACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661
|||||||||||||| |||||| | ||| |||| |||||||
Sbjct 14958 AACCATATGCTTGAGTTTTTGGTAGTAGATGGGTCCGAAGAAGATG 14913
>seq345
Length=432923
Score = 100 bits (110), Expect = 8e-16
Identities = 214/318 (67%), Gaps = 4/318 (1%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
||||| || |||| |||||||||||||| | | || || ||| | ||| |||
Sbjct 172095 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGTGATTTTCCCTTGGCAGCAGCA 172036
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|||||||| | || || ||| || | |||||| || | || | |||||||| |
Sbjct 172035 AATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCCA 171976
Query 289150 GATACTTGAAT--GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
|| | |||| ||||| || ||||| || || || || | || | ||| ||||
Sbjct 171975 GACA--TGAAGAAGAATGGAACGCCAGCTTCACCGGCAACCGCTCGTGCTAAAAGAGTCT 171918
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267
| || || ||||| || || |||| || ||||||||||| | ||| | ||| ||
Sbjct 171917 TTCCAGTACCAGGAGGACCAACTAAAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTAG 171858
Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327
| | || ||||| |||| | ||||| || | || | |||||| | ||||||||| |
Sbjct 171857 AAAACTTTTCAGGATTCTTGAGGAATTCCACGAGATCTTGAAGTTCTTCTTTTGCCTCGT 171798
Query 289328 CACATCCTGCTACATCAG 289345
| || || |||||||
Sbjct 171797 CGCAACCATGGACATCAG 171780
>seq24
Length=734891
Score = 96.9 bits (106), Expect = 1e-14
Identities = 178/261 (68%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||| || ||||||||||||||| || || || || || ||||| || ||
Sbjct 286500 CTTGACAAGACGGCGTTGAATATAACCAGTTTCAGCAGTCTTCACTGCGGTATCGATGAG 286441
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702
||| |||||||| |||| || ||||| || | ||| ||| || ||| | || | |
Sbjct 286440 ACCTTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTTGGTGTTAACCCACGAAGATA 286381
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
||| | ||||| || || | | || || || | || ||| || || || || ||
Sbjct 286380 TGAGTTTTCAACAAATCCTCTTGATTCTGGGGAGTAATCATCCTTTGTGAAATGAGGAAG 286321
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822
|| | || | ||||| | || ||||||||||| || || ||||| || | |
Sbjct 286320 TGTTCGGTATTTGAAGCCGAAAGGAATACGCTTTCCTTCCACAGATTGCTGACCAACGAG 286261
Query 302823 CGAAATCATCTGCGAAATATT 302843
|| | ||||||| || |||||
Sbjct 286260 CGCAGTCATCTGAGAGATATT 286240
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||||| | ||| || |||||| |||| ||||| ||| || | ||||| |||
Sbjct 287291 AGAATTTCTTTTAGACGAGGCACACCAAGGGTGACGTT---CTTCGAAGACACACCTGCA 287235
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||||||||| || || | ||| || | || || |||||| ||| || ||||
Sbjct 287234 AAATGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAGCAGCAAGG 287175
Query 301933 ATACCAACCATTTCTCCTGG 301952
| |||||||||||||| ||
Sbjct 287174 ACTCCAACCATTTCTCCAGG 287155
>seq101
Length=641113
Score = 86.0 bits (94), Expect = 2e-11
Identities = 112/152 (74%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| |||||||| |||||||||||||| | || ||| |
Sbjct 354204 TGAGCAATTGTCATACGAGACGGAATAGCGTGGGGATTGATGATAAGATCCGGTACGATG 354263
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAA-TGTTTCCAATAGTTCCCTTT 251955
|| | |||||| ||||| |||| || || ||| | | || ||||| |||||
Sbjct 354264 CCCTGGCAAGTGAAAGGCATGTCCT---CCATTCTATACGTAATACCGATAGTACCCTTC 354320
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| |||||| ||||||||
Sbjct 354321 TGTCCGTGACGAGAAGCGAACTTGTCACCAAT 354352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471808095737848
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