Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq367 109 7e-18
seq476 104 3e-16
>seq367
Length=424288
Score = 109 bits (120), Expect = 7e-18
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||| |||||||| || | ||| | || ||||| | || ||||||||||
Sbjct 139821 CCAACTACCTCGATATCAAGCCACTCTTGGATGTCGGATGCAAAACCGTTGCCAACATGA 139880
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 139881 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACATTCAACAT 139923
>seq476
Length=308794
Score = 104 bits (114), Expect = 3e-16
Identities = 176/252 (70%), Gaps = 5/252 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| |||||| ||||| ||||| || | || |||||
Sbjct 12081 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATG 12140
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| |||||| ||| || ||||| || |
Sbjct 12141 TTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAGG 12200
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868
|| || || |||||||| ||||| ||||| || ||| | | |||||||||||| ||
Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||| | | || || | |||| ||| ||||||| ||| ||||| || |||||| ||
Sbjct 12261 AGAGCACAA--GGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGA 12318
Query 868929 TGATCTGCCTGG 868940
||| | ||||||
Sbjct 12319 TGA-CGGCCTGG 12329
Score = 91.5 bits (100), Expect = 2e-12
Identities = 171/251 (68%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||| ||||| ||||| ||| | |||||| | ||||
Sbjct 12731 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGG 12790
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | |||| || || ||||||||| || || ||||| ||| |||||
Sbjct 12791 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTAACAATTCCGTCAGAGGCAGCGAAG 12850
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809
||||| |||||||| |||||||| || || || ||| ||||| ||| | |
Sbjct 12851 AAAGCGAGGACGTGGGAGATAAAGTAACGTTCATCATCGTTGAGCTTGTTGTTCCAATCG 12910
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | || || | ||| ||||| ||||||| || || |||||||| |||
Sbjct 12911 TGGAGATCCTTGGATAGATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTG 12970
Query 869870 TACATCTCCCA 869880
||||| | |||
Sbjct 12971 TACATTTGCCA 12981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107097839399768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |