Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq367 109 7e-18 seq476 104 3e-16 >seq367 Length=424288 Score = 109 bits (120), Expect = 7e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||| |||||||| || | ||| | || ||||| | || |||||||||| Sbjct 139821 CCAACTACCTCGATATCAAGCCACTCTTGGATGTCGGATGCAAAACCGTTGCCAACATGA 139880 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| || ||||| ||||||||||| || ||||| Sbjct 139881 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACATTCAACAT 139923 >seq476 Length=308794 Score = 104 bits (114), Expect = 3e-16 Identities = 176/252 (70%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| ||||| ||||| || | || ||||| Sbjct 12081 GCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATG 12140 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| |||||| ||| || ||||| || | Sbjct 12141 TTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAGG 12200 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 || || || |||||||| ||||| ||||| || ||| | | |||||||||||| || Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||| | | || || | |||| ||| ||||||| ||| ||||| || |||||| || Sbjct 12261 AGAGCACAA--GGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGA 12318 Query 868929 TGATCTGCCTGG 868940 ||| | |||||| Sbjct 12319 TGA-CGGCCTGG 12329 Score = 91.5 bits (100), Expect = 2e-12 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||| ||||| ||||| ||| | |||||| | |||| Sbjct 12731 GAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGG 12790 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | |||| || || ||||||||| || || ||||| ||| ||||| Sbjct 12791 ACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTAACAATTCCGTCAGAGGCAGCGAAG 12850 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 ||||| |||||||| |||||||| || || || ||| ||||| ||| | | Sbjct 12851 AAAGCGAGGACGTGGGAGATAAAGTAACGTTCATCATCGTTGAGCTTGTTGTTCCAATCG 12910 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | || || | ||| ||||| ||||||| || || |||||||| ||| Sbjct 12911 TGGAGATCCTTGGATAGATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTG 12970 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 12971 TACATTTGCCA 12981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107097839399768