Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq18 105 6e-18
>seq18
Length=186891
Score = 105 bits (116), Expect = 6e-18
Identities = 138/188 (73%), Gaps = 6/188 (3%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
|||||||| ||||| || || || || || | ||||||| | || | || ||
Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGAGC 166793
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || || || || || ||||| ||||||||||||||||| || ||
Sbjct 166794 AAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAAG 166853
Query 24848 CAGCTGGAGGATTCGAGAAACA---TGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
||||| ||||| || || || | || ||||| ||||| || ||||| || || ||
Sbjct 166854 CAGCTCGAGGA--CG-GACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTT 166910
Query 24905 CACTTGGT 24912
||||||||
Sbjct 166911 CACTTGGT 166918
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
||||| || ||||| || ||||| || ||| | | ||| || | || | || ||
Sbjct 167018 ACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGACAACGTCAAGTCG 167077
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || || || || ||||||||| | |||||||| || ||
Sbjct 167078 AAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAG 167137
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || ||||| | | | | || || || |||||||| || || || || || |||
Sbjct 167138 CAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAGTCTACTCTCCAC 167197
Query 24908 TTGGT 24912
|||||
Sbjct 167198 TTGGT 167202
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| | || || | || || || |||||||| | ||||| || | |
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || || ||||||||| || || || || || || || || |||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG--ATTATA 24881
|| || ||||| || ||||| || || |||||||| | | || |||| |||| |
Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTA-CAC-TCAGCGATTACA 167627
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||||| || || ||||||||| | || | || |||||
Sbjct 167628 ACATTCAAAAGGAGAGCACTCTGCACTTGGTGCTTCGCCTTCGTGGAGG 167676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894765645120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |