Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq18 105 6e-18 >seq18 Length=186891 Score = 105 bits (116), Expect = 6e-18 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| ||||| || || || || || | ||||||| | || | || || Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGAGC 166793 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || ||||| ||||||||||||||||| || || Sbjct 166794 AAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAAG 166853 Query 24848 CAGCTGGAGGATTCGAGAAACA---TGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| || || || | || ||||| ||||| || ||||| || || || Sbjct 166854 CAGCTCGAGGA--CG-GACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTT 166910 Query 24905 CACTTGGT 24912 |||||||| Sbjct 166911 CACTTGGT 166918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || ||||| || ||||| || ||| | | ||| || | || | || || Sbjct 167018 ACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGACAACGTCAAGTCG 167077 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || || || ||||||||| | |||||||| || || Sbjct 167078 AAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAG 167137 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | | || || || |||||||| || || || || || ||| Sbjct 167138 CAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAGTCTACTCTCCAC 167197 Query 24908 TTGGT 24912 ||||| Sbjct 167198 TTGGT 167202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || | || || || |||||||| | ||||| || | | Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||| || || || || || || || || ||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG--ATTATA 24881 || || ||||| || ||||| || || |||||||| | | || |||| |||| | Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTA-CAC-TCAGCGATTACA 167627 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||| || || ||||||||| | || | || ||||| Sbjct 167628 ACATTCAAAAGGAGAGCACTCTGCACTTGGTGCTTCGCCTTCGTGGAGG 167676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894765645120