Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq367 114 2e-19
seq476 104 4e-16
>seq367
Length=424288
Score = 114 bits (126), Expect = 2e-19
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
||||||||||||| |||||||| ||| | ||| | || ||||| ||||| |||||| | |
Sbjct 139821 CCAACTACCTCGATATCAAGCCACTCTTGGATGTCGGATGCAAAACCGTTGCCAACATGA 139880
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 139881 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACATTCAACAT 139923
>seq476
Length=308794
Score = 104 bits (114), Expect = 4e-16
Identities = 181/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || | || ||| |||||| ||||| ||||| || | |
Sbjct 12073 TGACACCAGCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAA 12132
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| |||||||| | ||| |||||| ||||
Sbjct 12133 GAGAGATGTTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGA 12192
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| || || || || ||||||||||| |||||||| || ||| | | ||||||||
Sbjct 12193 GAGAAAGGAGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCA 12252
Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||| || |||| | | || || | |||| | | ||||||| ||| ||||| || ||
Sbjct 12253 TGCCCAGAAGAGCACAA--GGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGC 12310
Query 794129 CTCGATGATGATCTGCCTGG 794148
|||| |||||| | ||||||
Sbjct 12311 CTCGGTGATGA-CGGCCTGG 12329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916192787221256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |