Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq367 114 2e-19 seq476 104 4e-16 >seq367 Length=424288 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||| |||||||| ||| | ||| | || ||||| ||||| |||||| | | Sbjct 139821 CCAACTACCTCGATATCAAGCCACTCTTGGATGTCGGATGCAAAACCGTTGCCAACATGA 139880 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| || ||||| ||||||||||| || ||||| Sbjct 139881 TCAAGGGCAAGTCTCCAGAGGAAATCCGCAAGACATTCAACAT 139923 >seq476 Length=308794 Score = 104 bits (114), Expect = 4e-16 Identities = 181/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || | || ||| |||||| ||||| ||||| || | | Sbjct 12073 TGACACCAGCCTTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAA 12132 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| |||||||| | ||| |||||| |||| Sbjct 12133 GAGAGATGTTCTCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGA 12192 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | || || || || ||||||||||| |||||||| || ||| | | |||||||| Sbjct 12193 GAGAAAGGAGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCA 12252 Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||| || |||| | | || || | |||| | | ||||||| ||| ||||| || || Sbjct 12253 TGCCCAGAAGAGCACAA--GGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGC 12310 Query 794129 CTCGATGATGATCTGCCTGG 794148 |||| |||||| | |||||| Sbjct 12311 CTCGGTGATGA-CGGCCTGG 12329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916192787221256