Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq18 95.1 8e-15
seq30 91.5 1e-13
>seq18
Length=186891
Score = 95.1 bits (104), Expect = 8e-15
Identities = 132/185 (71%), Gaps = 10/185 (5%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||||||||| |||||||| ||| |||| | || || |||||||| || || ||
Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903
||| || ||||| ||||| | || | ||||||||||| | || || ||||||
Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTT 167066
Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960
|||| ||||| | || ||||| || | ||| || ||||| || || | ||||
Sbjct 167065 GTCGATGGTATCGCTCGAT-----TCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 167011
Query 34961 TTTAC 34965
|| ||
Sbjct 167010 TTGAC 167006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 167/241 (69%), Gaps = 9/241 (4%)
Strand=Plus/Minus
Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800
|| ||||| |||||| | | | || |||| ||| | ||||||||||| ||||||||
Sbjct 167686 CACTCATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTT 167627
Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860
|| || || | || |||| |||| |||||| |||||||| |||| ||| || ||
Sbjct 167626 GTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTG 167567
Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----T 34916
|||| | || | |||||||| || | || ||| ||||| || |||| || |
Sbjct 167566 GTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGAC--AT--TATCAATTGTGT 167511
Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976
| | ||| || || | || || ||||| ||||| | ||||| ||||| || ||||
Sbjct 167510 CCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCA 167451
Query 34977 T 34977
|
Sbjct 167450 T 167450
Score = 84.2 bits (92), Expect = 1e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||||||| ||||| || || || || |||| | ||
Sbjct 166921 AGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCC 166862
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||||| |||||||| ||| | || | |||||||||||
Sbjct 166861 TCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTC 166803
>seq30
Length=167504
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827
||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || ||
Sbjct 89656 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCTTC 89597
Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
|||||||| ||||||||||| || ||||| || || | || | ||||||||||| |
Sbjct 89596 GAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 89537
Query 34888 TATTTTTTGTTTGAC 34902
|| || ||||||
Sbjct 89536 GATCTTGGATTTGAC 89522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690799431976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |