Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 8e-15 seq30 91.5 1e-13 >seq18 Length=186891 Score = 95.1 bits (104), Expect = 8e-15 Identities = 132/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| |||||||| ||| |||| | || || |||||||| || || || Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903 ||| || ||||| ||||| | || | ||||||||||| | || || |||||| Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTT 167066 Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 |||| ||||| | || ||||| || | ||| || ||||| || || | |||| Sbjct 167065 GTCGATGGTATCGCTCGAT-----TCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 167011 Query 34961 TTTAC 34965 || || Sbjct 167010 TTGAC 167006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 34742 CAATCATT-TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 || ||||| |||||| | | | || |||| ||| | ||||||||||| |||||||| Sbjct 167686 CACTCATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTT 167627 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 || || || | || |||| |||| |||||| |||||||| |||| ||| || || Sbjct 167626 GTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTG 167567 Query 34861 GTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----T 34916 |||| | || | |||||||| || | || ||| ||||| || |||| || | Sbjct 167566 GTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGAC--AT--TATCAATTGTGT 167511 Query 34917 CATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 | | ||| || || | || || ||||| ||||| | ||||| ||||| || |||| Sbjct 167510 CCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCA 167451 Query 34977 T 34977 | Sbjct 167450 T 167450 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||| ||||| || || || || |||| | || Sbjct 166921 AGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCC 166862 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||||| |||||||| ||| | || | ||||||||||| Sbjct 166861 TCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTC 166803 >seq30 Length=167504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34768 GACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 ||| || |||| ||| ||||||||| ||||| |||||||| ||| | || | || || Sbjct 89656 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCTTC 89597 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 |||||||| ||||||||||| || ||||| || || | || | ||||||||||| | Sbjct 89596 GAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGTCCTG 89537 Query 34888 TATTTTTTGTTTGAC 34902 || || |||||| Sbjct 89536 GATCTTGGATTTGAC 89522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690799431976