Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-19 >seq18 Length=186891 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 29553 TCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA 29612 || ||||||||| | | || |||||||| || || ||| || ||||||||||| || Sbjct 167683 TCATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTA 167624 Query 29613 ATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 ||| | || || ||| || | ||| ||||| || | ||||||| || || || Sbjct 167623 ATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTC 167564 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732 || ||||||||||| || || || | ||| |||||| | || | ||||| ||| Sbjct 167563 TGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGA 167504 Query 29733 TTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | || ||||| ||||| || || || || |||||||| ||||| Sbjct 167503 CTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||||||||| || || || ||||| ||||| | | ||||| Sbjct 166925 ACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCC 166866 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || ||||||||| | ||||| | ||||||||| || ||||| ||||| || Sbjct 166865 GTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTT 166806 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||||| | || | |||||| || || || ||||| || || Sbjct 166805 GTCCTGGATCTTGCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGAT 166746 Query 29751 AGTTTTGCCAGT 29762 ||| || || || Sbjct 166745 AGTCTTACCGGT 166734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216833791064