Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq76 116 3e-20
seq485 111 1e-18
seq453 93.3 3e-13
seq24 93.3 3e-13
>seq76
Length=110257
Score = 116 bits (128), Expect = 3e-20
Identities = 248/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| || |||||||| | |||||| ||||| |||||||| ||||| |||| | ||||||
Sbjct 91767 ATTCCGTTGGCATCGACATCAAAGGTGACCTCAATTTGTGGGACACCTCGTGGCGCAGGT 91826
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | ||| | |||| | || || || || ||| || || |||
Sbjct 91827 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 91886
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||||| | ||||||| || ||| ||| || || || | || | || || |
Sbjct 91887 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 91946
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || || || || |||||||| || | |||||||| |||||||||
Sbjct 91947 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 92006
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | ||| || || | || | |||||| | |||| || | || | | ||
Sbjct 92007 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 92066
Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| | || | || ||||| || || |||| |||||||| ||||||||||| |||
Sbjct 92067 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 92126
Query 281798 TCAGGATT 281805
||||| ||
Sbjct 92127 TCAGGGTT 92134
>seq485
Length=272343
Score = 111 bits (122), Expect = 1e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| || || || || |||| |||||||||||||| || || | | ||||| ||| |||
Sbjct 127529 TTCTCGAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 127470
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||| |||||| || ||||| || |||||||| | |||||||||||| || |||||
Sbjct 127469 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 127410
Query 282455 GGAACAGTAATAACGGCAT 282473
|| || || | ||||||||
Sbjct 127409 GGGACTGTGACAACGGCAT 127391
>seq453
Length=375474
Score = 93.3 bits (102), Expect = 3e-13
Identities = 192/285 (67%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
|||| ||||||| ||||||||| | |||| || | ||||| | || ||||| |
Sbjct 77799 TATCGAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTAGCCTTGACGGTGAAAACAC 77858
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
|| | | | | || | |||||| ||||| ||||| | ||| |||| | |
Sbjct 77859 CACCCTGGATGTTAAGGAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAAATCAAGA 77918
Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366
|||| || |||| ||| ||| | | ||||| || || | |||||| |||||
Sbjct 77919 CATTTCGCTCCTTGT--TGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 77976
Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426
||| || || || |||| | |||||||||||| ||||| |||||||| || |||||
Sbjct 77977 TGGCTCGTTGATGATTCGGAGAACATTAAGACCGGCAATGGCACCTGCATCCTTGGTGGC 78036
Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471
||| | || ||||| || || || || ||||| || || ||
Sbjct 78037 TTGACGCTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 78081
>seq24
Length=734891
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| || || ||||| | |||||||||||||||||| | || |||| || | || |||
Sbjct 286405 GAGTTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGATACCGCAGTGAAGACT 286464
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252
||||| ||||||||||||||| | ||||||||| ||||| ||| | | ||
Sbjct 286465 GCTGAAACTGGTTATATTCAACGCCGTCTTGTCAAGGCACTTGAGGATGTCATTGCCAAA 286524
Query 435253 TATGATGGTACAGTGAGAAAT 435273
|||||||| ||||| |||||
Sbjct 286525 TATGATGGAACAGTCCGAAAT 286545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740605655729904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |