Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq76 116 3e-20 seq485 111 1e-18 seq453 93.3 3e-13 seq24 93.3 3e-13 >seq76 Length=110257 Score = 116 bits (128), Expect = 3e-20 Identities = 248/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | |||||| ||||| |||||||| ||||| |||| | |||||| Sbjct 91767 ATTCCGTTGGCATCGACATCAAAGGTGACCTCAATTTGTGGGACACCTCGTGGCGCAGGT 91826 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 91827 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 91886 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 91887 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 91946 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| || | |||||||| ||||||||| Sbjct 91947 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 92006 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 92007 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 92066 Query 281739 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | || ||||| || || |||| |||||||| ||||||||||| ||| Sbjct 92067 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 92126 Query 281798 TCAGGATT 281805 ||||| || Sbjct 92127 TCAGGGTT 92134 >seq485 Length=272343 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || || || || |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 127529 TTCTCGAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 127470 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| |||||| || ||||| || |||||||| | |||||||||||| || ||||| Sbjct 127469 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 127410 Query 282455 GGAACAGTAATAACGGCAT 282473 || || || | |||||||| Sbjct 127409 GGGACTGTGACAACGGCAT 127391 >seq453 Length=375474 Score = 93.3 bits (102), Expect = 3e-13 Identities = 192/285 (67%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||| ||||||||| | |||| || | ||||| | || ||||| | Sbjct 77799 TATCGAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTAGCCTTGACGGTGAAAACAC 77858 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 || | | | | || | |||||| ||||| ||||| | ||| |||| | | Sbjct 77859 CACCCTGGATGTTAAGGAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAAATCAAGA 77918 Query 282312 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 |||| || |||| ||| ||| | | ||||| || || | |||||| ||||| Sbjct 77919 CATTTCGCTCCTTGT--TGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 77976 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||| || || || |||| | |||||||||||| ||||| |||||||| || ||||| Sbjct 77977 TGGCTCGTTGATGATTCGGAGAACATTAAGACCGGCAATGGCACCTGCATCCTTGGTGGC 78036 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| | || ||||| || || || || ||||| || || || Sbjct 78037 TTGACGCTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 78081 >seq24 Length=734891 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || || || ||||| | |||||||||||||||||| | || |||| || | || ||| Sbjct 286405 GAGTTCTTTTTCCACGCCATGGCTGGTCGTGAAGGTCTCATCGATACCGCAGTGAAGACT 286464 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||||||| | ||||||||| ||||| ||| | | || Sbjct 286465 GCTGAAACTGGTTATATTCAACGCCGTCTTGTCAAGGCACTTGAGGATGTCATTGCCAAA 286524 Query 435253 TATGATGGTACAGTGAGAAAT 435273 |||||||| ||||| ||||| Sbjct 286525 TATGATGGAACAGTCCGAAAT 286545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740605655729904