Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq18 134 3e-26
>seq18
Length=186891
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| ||||| |||||||| |||||||| || || || || || || | | ||
Sbjct 167209 ACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCC 167150
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || ||||| || ||||||||||| || | |||||| || || || || || |||||
Sbjct 167149 GTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTT 167090
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| | || || || || || ||||| | | ||| || || | || ||
Sbjct 167089 GTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGAT 167030
Query 82775 CGTCTTGCCTGTCAACGTCTTTAC 82798
|||||||| ||||| ||||| ||
Sbjct 167029 AGTCTTGCCGGTCAAGGTCTTGAC 167006
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || ||||||||||| || || || || || ||||| || | | ||
Sbjct 167664 CGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCA 167605
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || | ||| || || || || || | || ||||| ||||| || || || ||||||
Sbjct 167604 TCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTA 167545
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||||| || ||||| ||||| || || || || |||||||| || ||
Sbjct 167544 TCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATA 167485
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||| |||||||| |||||
Sbjct 167484 GTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 93.3 bits (102), Expect = 8e-14
Identities = 124/170 (73%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| || || || || ||||| || || |||||||
Sbjct 166938 TACCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAG 166879
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||||| || || || || ||||||||||| | | ||| |||||||| |
Sbjct 166878 AGAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGG 166819
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATC 82750
| || || ||||| || || ||| ||||| || || || || || || ||
Sbjct 166818 GAATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATAGTGTC 166770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981820859850856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |