Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq104 111 4e-19
>seq104
Length=83277
Score = 111 bits (122), Expect = 4e-19
Identities = 310/469 (66%), Gaps = 10/469 (2%)
Strand=Plus/Minus
Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733
|| |||| ||| ||||||| ||| | |||| |||||| |||| || | |||||| |||
Sbjct 48197 CTCCAAC-GGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATC 48139
Query 110734 AAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790
|||||||| ||| | ||| | || || ||||| || || || ||||| |||||
Sbjct 48138 AAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATG 48079
Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850
| || || ||| | || || || || || || ||| || || | || ||||||
Sbjct 48078 TTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATC 48019
Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATG- 110909
| || || || | ||||| ||||| | |||||||| |||||| || | || | ||
Sbjct 48018 TCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA--CCTTGA 47961
Query 110910 -TGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGT 110967
||| | | ||||| || || || | |||||| | | || || || || | ||||
Sbjct 47960 CTGGACATTGATGTG-CCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGT 47902
Query 110968 TTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTC 111027
| || | | || || ||||| || ||||||||| |||||| || ||| |
Sbjct 47901 TCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTCGCAAGAGCATCAAAGCCC 47842
Query 111028 AAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGT 111087
|| | ||||||| | |||||||| | || ||| || |||| |||| || | |
Sbjct 47841 AAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACCGGAAACCCTTTCATGCTTT 47782
Query 111088 ATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136
| || ||| | || || || ||| |||| |||| | || || ||
Sbjct 47781 ACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTCGGTACCAT 47733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186805136156344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |