Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq104 111 4e-19 >seq104 Length=83277 Score = 111 bits (122), Expect = 4e-19 Identities = 310/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 || |||| ||| ||||||| ||| | |||| |||||| |||| || | |||||| ||| Sbjct 48197 CTCCAAC-GGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATC 48139 Query 110734 AAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 |||||||| ||| | ||| | || || ||||| || || || ||||| ||||| Sbjct 48138 AAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATG 48079 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | || || ||| | || || || || || || ||| || || | || |||||| Sbjct 48078 TTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATC 48019 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATG- 110909 | || || || | ||||| ||||| | |||||||| |||||| || | || | || Sbjct 48018 TCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA--CCTTGA 47961 Query 110910 -TGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGT 110967 ||| | | ||||| || || || | |||||| | | || || || || | |||| Sbjct 47960 CTGGACATTGATGTG-CCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGT 47902 Query 110968 TTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTC 111027 | || | | || || ||||| || ||||||||| |||||| || ||| | Sbjct 47901 TCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTCGCAAGAGCATCAAAGCCC 47842 Query 111028 AAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGT 111087 || | ||||||| | |||||||| | || ||| || |||| |||| || | | Sbjct 47841 AAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACCGGAAACCCTTTCATGCTTT 47782 Query 111088 ATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 | || ||| | || || || ||| |||| |||| | || || || Sbjct 47781 ACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTCGGTACCAT 47733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805136156344