Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18 105 4e-18 >seq18 Length=186891 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || ||||||||||| ||||| |||||||||||| |||||| || | || || Sbjct 167659 CACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTC 167600 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 |||||| || ||||| |||||||| ||||| || ||| | || | ||| || || || Sbjct 167599 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 167540 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | |||| || | ||||| || || || || | || || || | Sbjct 167539 GATCTT-TGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCT 167481 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || ||||| || |||||| Sbjct 167480 TGCCCGTCAAAGTCTTGACAAATATTTGCATA 167449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| ||| || || ||||||||||| ||||| |||||| |||| || Sbjct 166918 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCG 166859 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT-CGGC 33659 | || || || ||||| |||||||| ||||||||| | || | || || |||| | | Sbjct 166858 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 166799 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 | || || || || | ||| | |||||| || ||||| |||| ||||| || | Sbjct 166798 ATCTTGCTCTT--GACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCT 166741 Query 33719 TACCTGT 33725 |||| || Sbjct 166740 TACCGGT 166734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701980935680