Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq476 91.5 1e-13 seq18 91.5 1e-13 >seq476 Length=308794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| || || | ||| || || |||| | ||||||||| || ||||| ||||| Sbjct 12807 GCTCGAGGAGGTTCTCGTTAACAATTCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGG 12866 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | |||| | ||||| | ||||| || || |||||||| || | | |||||||| | Sbjct 12867 AGATAAAGTAACGTTCATCATCGTTGAGCTTGTTGTTCCAATCGTGGAGATCCTTGGATA 12926 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 || ||||||||| | ||||| || | | |||||||||||| ||||| |||| Sbjct 12927 GATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCC--AGAT 12984 Query 110892 CT 110893 || Sbjct 12985 CT 12986 >seq18 Length=186891 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || ||| | Sbjct 167222 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCA 167281 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | ||||| || ||| ||||| |||||||| || || || || Sbjct 167282 GATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 167341 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||||||||| || ||||| ||| | || |||| ||| |||| ||| |||| Sbjct 167342 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTC--CGACTACA 167399 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||| ||||| || ||||| ||||||| || Sbjct 167400 ATATCCAAAAGGAGTCCACACTTCATTTGGT 167430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091595905280