Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq476 91.5 1e-13
seq18 91.5 1e-13
>seq476
Length=308794
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771
|||||| || || | ||| || || |||| | ||||||||| || ||||| |||||
Sbjct 12807 GCTCGAGGAGGTTCTCGTTAACAATTCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGG 12866
Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831
| |||| | ||||| | ||||| || || |||||||| || | | |||||||| |
Sbjct 12867 AGATAAAGTAACGTTCATCATCGTTGAGCTTGTTGTTCCAATCGTGGAGATCCTTGGATA 12926
Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891
|| ||||||||| | ||||| || | | |||||||||||| ||||| ||||
Sbjct 12927 GATCAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCC--AGAT 12984
Query 110892 CT 110893
||
Sbjct 12985 CT 12986
>seq18
Length=186891
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | || ||||| | ||||| | || || ||| |
Sbjct 167222 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCA 167281
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||||||||| | ||||| || ||| ||||| |||||||| || || || ||
Sbjct 167282 GATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 167341
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| ||||||||| || ||||| ||| | || |||| ||| |||| ||| ||||
Sbjct 167342 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTC--CGACTACA 167399
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383
|||| ||||| || ||||| ||||||| ||
Sbjct 167400 ATATCCAAAAGGAGTCCACACTTCATTTGGT 167430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445091595905280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |