Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq476 116 5e-20 >seq476 Length=308794 Score = 116 bits (128), Expect = 5e-20 Identities = 208/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || || || ||||| ||||| ||| | || | Sbjct 12985 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATC 12927 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 | | || ||||| ||| ||| | ||| || || || | || | Sbjct 12926 TATCCAAGGATC---TCCACGATTGGAACAACAAGCTCAACGATGATGAACGTTACTTTA 12870 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||||||||||| ||| ||||| ||| || || || || ||||||||| | Sbjct 12869 TCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTC 12811 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| | | || |||||| | |||||||| || || || ||||| ||||| ||| Sbjct 12810 GAGCGCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATC 12751 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||||||||| || |||||||| ||||| ||||| ||||| ||| ||| Sbjct 12750 ATGATGGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGATACCTATATCATGGA 12692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177762588273648