Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq476 116 5e-20
>seq476
Length=308794
Score = 116 bits (128), Expect = 5e-20
Identities = 208/299 (70%), Gaps = 11/299 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || |||||||| || || || ||||| ||||| ||| | || |
Sbjct 12985 GATCTGGCAAATGTAC-AAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATC 12927
Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888
| | || ||||| ||| ||| | ||| || || || | || |
Sbjct 12926 TATCCAAGGATC---TCCACGATTGGAACAACAAGCTCAACGATGATGAACGTTACTTTA 12870
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| ||||||||||| ||| ||||| ||| || || || || ||||||||| |
Sbjct 12869 TCTCCCACGTCCTCGC-TTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTC 12811
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| ||||| | | || |||||| | |||||||| || || || ||||| ||||| |||
Sbjct 12810 GAGCGCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATC 12751
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || ||||||||||| || |||||||| ||||| ||||| ||||| ||| |||
Sbjct 12750 ATGATGGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGATACCTATATCATGGA 12692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177762588273648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |