Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq18 118 1e-21
>seq18
Length=186891
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568
||| ||||| | | | |||||| || | || ||||||||||||||||||||||||
Sbjct 167677 TCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCT 167618
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
| || || | || |||| ||||| || || || ||||| ||||| ||||| | ||
Sbjct 167617 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGG 167558
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
|| | |||||| ||| ||||||| ||| | | | | | ||||| || || ||
Sbjct 167557 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 167498
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| || || || || ||||||||||| || |||||||| |||||
Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 104 bits (114), Expect = 2e-17
Identities = 136/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| |||||| || ||||||||||| | | || || |||| ||
Sbjct 166918 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCG 166859
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| || ||||| ||||| || ||||| || | |||| || |||||||||| |
Sbjct 166858 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 166799
Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| ||| | |||| | | |||||| ||| |||||||| | ||||| || ||
Sbjct 166798 ATCTTGCTCTTGA-CGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 166740
Query 35707 ACCCGT 35712
||| ||
Sbjct 166739 ACCGGT 166734
Score = 102 bits (112), Expect = 7e-17
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||| | | | ||||| || | ||| ||| || ||||||||||| || |
Sbjct 167222 TTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCG 167163
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| ||| || |||| || || |||||||| ||||| || | || || ||||||| |
Sbjct 167162 AAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 167103
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCC 35686
| | || ||||||||| |||||| ||| | |||| | | || |||||||||||
Sbjct 167102 GGATGCCCTCCTTGTCTTGGATCTTCGACTTGAC-GTTGTCGATGGTATCGCTCGATTCG 167044
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
||||| | ||||| || || || ||||| || || ||
Sbjct 167043 ACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGAC 167006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450790760000320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |