Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18 118 1e-21 >seq18 Length=186891 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| |||||||| ||||| || |||||||| || | ||| | ||| |||||||| Sbjct 166913 GTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCGAGCTG 166854 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||||||| |||||||| || || ||||| || || || || || || Sbjct 166853 CTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 166794 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||||||||| ||||| || || || || || |||||||| Sbjct 166793 GCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 166734 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | || || | ||| | ||| || ||| ||||||||||||||||| |||| Sbjct 167677 TCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCT 167618 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | || || | || ||||| || |||||||| ||||| || || || || Sbjct 167617 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGG 167558 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || ||| ||||| || | |||||| || || || || Sbjct 167557 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 167498 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || ||||| || || || |||||||| Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || | ||| || || || || || |||||||||||||| Sbjct 167222 TTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCG 167163 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | ||| || || || || || ||||| || | ||| || || || || | Sbjct 167162 AAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 167103 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || ||||| || || ||||| ||| | || ||| |||||| | Sbjct 167102 GGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGA 167043 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | ||||| || || || || ||||| || || || |||| Sbjct 167042 CCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395215990080