Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq104 248 1e-60
>seq104
Length=83277
Score = 248 bits (274), Expect = 1e-60
Identities = 1136/1779 (64%), Gaps = 41/1779 (2%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| ||||| || |||| || || | | ||||| ||||||||||| || || || |||
Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| || |||| || |||||||||||| || | || |||| || ||
Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 46865
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| || ||||| |||||| |||||| ||||| || || | || || ||||| | |
Sbjct 46866 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 46925
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||| | || ||||||| ||||| ||| ||||||||| ||||||
Sbjct 46926 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAATA 46985
Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | ||||| || |||||||| || | || || ||||| || | ||| |
Sbjct 46986 TTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGAC 47045
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| | | | || | | | |||| || || || || | || || || |||
Sbjct 47046 CAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCCA 47105
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| | || | |||| || || || ||||||||| || | | || || ||
Sbjct 47106 GCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACCA 47165
Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850
||||| ||| || |||||||||||||| || || | ||||| || | | ||
Sbjct 47166 AGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCCG 47225
Query 68851 TGTGTTATGATTTTAT--CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908
||| | | | | | | ||| || | ||||||||||||||| | ||| ||||
Sbjct 47226 TGT-TGAGCAATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGTAGGTGTAACAC 47283
Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968
||| | || ||||| || || || ||| ||| || | ||||| ||||| |
Sbjct 47284 CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATG 47343
Query 68969 GTCCTTCCTGTTCAGCTAGTTC-AC--AACTTGCCTCTAATGCACCGTAATAAATTGTTT 69025
| || | || || | || || || | | || ||| ||| ||||| ||||
Sbjct 47344 GACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTTT 47400
Query 69026 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084
|||| || | | || || | |||| |||||| || ||||| ||| | | |
Sbjct 47401 CGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGAAGGCGAAGAGCC 47459
Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144
| || ||||| || | || ||||| || | | | |||||||| || | ||| |
Sbjct 47460 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 47518
Query 69145 CTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203
||||| || || |||| || ||||| || | ||| ||||| ||||| | || |||
Sbjct 47519 CTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 47578
Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA-TAACAAAC 69261
||||||| || || | || || | || ||| || | | ||| | |||
Sbjct 47579 GACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAAC 47638
Query 69262 ATATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-- 69315
|||| || || | ||||| | ||| ||||| || ||||||| | ||||
Sbjct 47639 ATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG---TGCACA 47695
Query 69316 -TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|| | | ||||| || || | || | | ||| || || ||||| | || ||
Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||||||| ||| || || ||||||||||| || || || | || || ||| ||||||
Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTT 69494
|| | ||||| | ||||| || || || | ||||| || ||| |||
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGAT---GCTCTTGCGACCCTTGCCTTC 47872
Query 69495 T---TCATATTGTGTATATA--GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549
|| |||| ||| | ||| ||||| || || || | || || ||||||||
Sbjct 47873 AGACTCGTATTTCTCATACAAAGCC--TCGAACTCGTCACCGTAGACGTCGGCCAATCCA 47930
Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609
||||| || || || |||||||||| ||| || | | | ||| || ||||| ||
Sbjct 47931 GGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAG 47990
Query 69610 AGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669
||||| || ||||| ||||| |||||||| | || | | || || |||||
Sbjct 47991 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 48050
Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729
|| ||| ||||| || ||||| | || ||| | |||||||| || || || || ||
Sbjct 48051 TTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCG 48110
Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789
| | || || || || || || || ||||| | ||||| || ||||| || | |||
Sbjct 48111 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170
Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849
| ||||| |||| ||| || || || || || ||||| || | ||||||| || |
Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230
Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909
|| || || | || | ||||| || || || || | || || || | ||||||
Sbjct 48231 GCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAA 48290
Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969
|||||||||||| || ||||| || ||||| || || |||||| | ||| || |||
Sbjct 48291 ATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 48350
Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029
|| | ||| ||| || || || || | ||| || || ||||| |||||
Sbjct 48351 GATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410
Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAAT 70088
|||| || | || ||||| || || || || | || |||||| | | | || ||
Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCG-TGGAT 48469
Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127
||| | || || ||||| | |||||| || || |||||
Sbjct 48470 TCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTC 48508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686904472474560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |