Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq104 248 1e-60 >seq104 Length=83277 Score = 248 bits (274), Expect = 1e-60 Identities = 1136/1779 (64%), Gaps = 41/1779 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || ||||| || |||| || || | | ||||| ||||||||||| || || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || || |||| || |||||||||||| || | || |||| || || Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 46865 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||| |||||| |||||| ||||| || || | || || ||||| | | Sbjct 46866 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 46925 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||| | || ||||||| ||||| ||| ||||||||| |||||| Sbjct 46926 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAATA 46985 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | ||||| || |||||||| || | || || ||||| || | ||| | Sbjct 46986 TTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGAC 47045 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | | || | | | |||| || || || || | || || || ||| Sbjct 47046 CAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCCA 47105 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | | || | |||| || || || ||||||||| || | | || || || Sbjct 47106 GCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACCA 47165 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 ||||| ||| || |||||||||||||| || || | ||||| || | | || Sbjct 47166 AGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCCG 47225 Query 68851 TGTGTTATGATTTTAT--CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | | | | | | ||| || | ||||||||||||||| | ||| |||| Sbjct 47226 TGT-TGAGCAATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGTAGGTGTAACAC 47283 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | || ||||| || || || ||| ||| || | ||||| ||||| | Sbjct 47284 CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATG 47343 Query 68969 GTCCTTCCTGTTCAGCTAGTTC-AC--AACTTGCCTCTAATGCACCGTAATAAATTGTTT 69025 | || | || || | || || || | | || ||| ||| ||||| |||| Sbjct 47344 GACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTTT 47400 Query 69026 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA 69084 |||| || | | || || | |||| |||||| || ||||| ||| | | | Sbjct 47401 CGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGAAGGCGAAGAGCC 47459 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 | || ||||| || | || ||||| || | | | |||||||| || | ||| | Sbjct 47460 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 47518 Query 69145 CTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 ||||| || || |||| || ||||| || | ||| ||||| ||||| | || ||| Sbjct 47519 CTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 47578 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA-TAACAAAC 69261 ||||||| || || | || || | || ||| || | | ||| | ||| Sbjct 47579 GACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAAC 47638 Query 69262 ATATTC----AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA-- 69315 |||| || || | ||||| | ||| ||||| || ||||||| | |||| Sbjct 47639 ATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG---TGCACA 47695 Query 69316 -TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 || | | ||||| || || | || | | ||| || || ||||| | || || Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||||||| ||| || || ||||||||||| || || || | || || ||| |||||| Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTT 69494 || | ||||| | ||||| || || || | ||||| || ||| ||| Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGAT---GCTCTTGCGACCCTTGCCTTC 47872 Query 69495 T---TCATATTGTGTATATA--GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || |||| ||| | ||| ||||| || || || | || || |||||||| Sbjct 47873 AGACTCGTATTTCTCATACAAAGCC--TCGAACTCGTCACCGTAGACGTCGGCCAATCCA 47930 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 ||||| || || || |||||||||| ||| || | | | ||| || ||||| || Sbjct 47931 GGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAG 47990 Query 69610 AGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 ||||| || ||||| ||||| |||||||| | || | | || || ||||| Sbjct 47991 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 48050 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || ||| ||||| || ||||| | || ||| | |||||||| || || || || || Sbjct 48051 TTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCG 48110 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | || || || || || || || ||||| | ||||| || ||||| || | ||| Sbjct 48111 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | ||||| |||| ||| || || || || || ||||| || | ||||||| || | Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || || || | || | ||||| || || || || | || || || | |||||| Sbjct 48231 GCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAA 48290 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 |||||||||||| || ||||| || ||||| || || |||||| | ||| || ||| Sbjct 48291 ATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 48350 Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || | ||| ||| || || || || | ||| || || ||||| ||||| Sbjct 48351 GATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAAT 70088 |||| || | || ||||| || || || || | || |||||| | | | || || Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCG-TGGAT 48469 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 ||| | || || ||||| | |||||| || || ||||| Sbjct 48470 TCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTC 48508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904472474560