Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq79 129 5e-25 >seq79 Length=672537 Score = 129 bits (142), Expect = 5e-25 Identities = 398/612 (65%), Gaps = 18/612 (3%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 |||| || ||| ||| || ||| |||||| |||||| || |||||| || || Sbjct 461326 CCAATTTCAAATTTGAG-GATATGGGAATTGGTGGATTGGATACCGAGTTTAGTGCGATT 461384 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 || || ||||| || | || || |||| || | | | ||| || |||| || | Sbjct 461385 TTCCGAAGAGCGTTCGCATCTCGCATTTTCCCTCCTGGATTGATTGAAAAATTAGGTATT 461444 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 | || || || | || |||| ||| || || ||| |||||||| || ||||| Sbjct 461445 CAGCACGTGAAGGGTATCTTACTTTTTGGACCTCCAGGTACCGGAAAAACCTTGATTGCT 461504 Query 19396 AGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || || | || | | | | | | |||| || | | |||||||| ||| Sbjct 461505 CGTCAAATTGGGAAGATGTTGAATTCGAGAGAACCA---AAGGTCATCAATGGTCCAGAA 461561 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 |||| ||||||||||| || ||||| || || ||| |||| | || || || || Sbjct 461562 GTCTTGAATAAATATGTTGGACAATCTGAGGAGAATATACGGAAACTCTTCGCAGATGCA 461621 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGA 19571 | |||| | | || | |||| | | | ||| | | ||||| || || | ||||| Sbjct 461622 G-AGAAAGAGTATAAGGAGAAGGGAGACGAGAGTGGTCTTCACATCATCATTTTTGATGA 461680 Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTGGTGTAAATGGAGTACATGA 19622 ||||| || |||| || || ||||| ||||| || ||| || ||| Sbjct 461681 GTTGGATGCCGTCTGCAAACAGAGAGGAAGTGGAGCCGGTGGTGGAACTGGTGTTGGTGA 461740 Query 19623 CACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTT 19682 || |||||| |||||||| || || ||| | || |||||| | || || || |||||||| Sbjct 461741 CAGTGTTGTTAATCAACTTCTCTCCAAACTTGATGGTGTTGATCAGCTCAACAATATTTT 461800 Query 19683 AGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742 | | ||||| ||||| ||| | |||| | || || || ||| |||| || || || Sbjct 461801 ACTCATTGGAATGACCAATCGTATGGATATGATTGATGATGCTTTACTACGTCCTGGACG 461860 Query 19743 GTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAA 19802 |||||| | | || || || |||| ||||| ||| || | ||||||| || Sbjct 461861 TTTGGAAGTTCACATGGAGATCTCGCTACCGGATGAGGCTGGCCGAGCCCAAATTTTGAA 461920 Query 19803 CATACATACATC 19814 || ||||| || Sbjct 461921 AATTCATACTTC 461932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453558626520