Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq79 129 5e-25
>seq79
Length=672537
Score = 129 bits (142), Expect = 5e-25
Identities = 398/612 (65%), Gaps = 18/612 (3%)
Strand=Plus/Plus
Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275
|||| || ||| ||| || ||| |||||| |||||| || |||||| || ||
Sbjct 461326 CCAATTTCAAATTTGAG-GATATGGGAATTGGTGGATTGGATACCGAGTTTAGTGCGATT 461384
Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335
|| || ||||| || | || || |||| || | | | ||| || |||| || |
Sbjct 461385 TTCCGAAGAGCGTTCGCATCTCGCATTTTCCCTCCTGGATTGATTGAAAAATTAGGTATT 461444
Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395
| || || || | || |||| ||| || || ||| |||||||| || |||||
Sbjct 461445 CAGCACGTGAAGGGTATCTTACTTTTTGGACCTCCAGGTACCGGAAAAACCTTGATTGCT 461504
Query 19396 AGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452
| || || | || | | | | | | |||| || | | |||||||| |||
Sbjct 461505 CGTCAAATTGGGAAGATGTTGAATTCGAGAGAACCA---AAGGTCATCAATGGTCCAGAA 461561
Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512
|||| ||||||||||| || ||||| || || ||| |||| | || || || ||
Sbjct 461562 GTCTTGAATAAATATGTTGGACAATCTGAGGAGAATATACGGAAACTCTTCGCAGATGCA 461621
Query 19513 GAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGA 19571
| |||| | | || | |||| | | | ||| | | ||||| || || | |||||
Sbjct 461622 G-AGAAAGAGTATAAGGAGAAGGGAGACGAGAGTGGTCTTCACATCATCATTTTTGATGA 461680
Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGG---------TTCTGGTGTAAATGGAGTACATGA 19622
||||| || |||| || || ||||| ||||| || ||| || |||
Sbjct 461681 GTTGGATGCCGTCTGCAAACAGAGAGGAAGTGGAGCCGGTGGTGGAACTGGTGTTGGTGA 461740
Query 19623 CACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTT 19682
|| |||||| |||||||| || || ||| | || |||||| | || || || ||||||||
Sbjct 461741 CAGTGTTGTTAATCAACTTCTCTCCAAACTTGATGGTGTTGATCAGCTCAACAATATTTT 461800
Query 19683 AGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742
| | ||||| ||||| ||| | |||| | || || || ||| |||| || || ||
Sbjct 461801 ACTCATTGGAATGACCAATCGTATGGATATGATTGATGATGCTTTACTACGTCCTGGACG 461860
Query 19743 GTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAA 19802
|||||| | | || || || |||| ||||| ||| || | ||||||| ||
Sbjct 461861 TTTGGAAGTTCACATGGAGATCTCGCTACCGGATGAGGCTGGCCGAGCCCAAATTTTGAA 461920
Query 19803 CATACATACATC 19814
|| ||||| ||
Sbjct 461921 AATTCATACTTC 461932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397453558626520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |