Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq104 264 1e-65 seq476 120 4e-22 seq222 111 2e-19 seq311 91.5 2e-13 >seq104 Length=83277 Score = 264 bits (292), Expect = 1e-65 Identities = 1168/1815 (64%), Gaps = 53/1815 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTAC-ATATGCATAGAAGA 110421 |||||||||||||| || |||||||| || | ||||| || | | | ||||||| | Sbjct 46779 CGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATGCATACTGGT 46837 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAA 110481 || ||| ||| ||||| | |||| || |||||| |||| ||| |||||||| Sbjct 46838 GATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 46897 Query 110482 -GCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTTCCCAAACTGT 110538 || || | || | || ||||| | | || | | | | | | || |||||||| || Sbjct 46898 TGCACCACGGTCG-GCAGCCATCTGGACGATGGTACGT--TGTGAGATCTCCCAAACGGT 46954 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598 || ||| |||||||||| |||| |||| || | ||| ||||| || || || | Sbjct 46955 CTTGTAAAGAGCCTTGATATCAGCTGGAATATTTGGAACATTTTGGATTGATCCACC-GT 47013 Query 110599 CTTCACCATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 | || |||| | | |||||| | | ||||||||| || || | || || || Sbjct 47014 CAGCA--ATGATACGGTTCTTCATGTTATCGGACCAGAGTCCCATATCAACAAGATCCTT 47071 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 | || |||||||| ||||| || || ||| | || || ||||| Sbjct 47072 AAGAAGCCATGGGTTGACAACCTGGAACTCTCCAGCAAGGACACGTCGAGAATATATGTT 47131 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | || ||||| || ||||| || || ||| | || || ||| ||| ||||| Sbjct 47132 GGAGGTATATGGCTCGAAGCACTCGTTGAAACCAAGAATCTGACTGGTACTGGCAGTTGG 47191 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| || || | | | |||||| || | || | | || ||| ||| | Sbjct 47192 CATAGGAGCGACGAGCAAACTGTTGCGGATGCCGTGTTGAGCAATCTGTTGCTTCAAGCT 47251 Query 110836 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 | |||| || | || | | ||| | || ||||||||||| | || ||| | || Sbjct 47252 AGCCCAATCCCAAA-GATCGGTAGGTGTAACAC-CCCACATGTCATATTGGAGCTCGCCC 47309 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 | ||| || || || || | | || ||||| | ||| || || ||||| || | Sbjct 47310 TTGGAGGCAGGTGAGCCTTGGTATGTCTCATATGGACCATGAATTTTTGCCAACTCCACG 47369 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 || || | ||||| || |||||||| ||||| | || | | ||||||| Sbjct 47370 GAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTAAGGTGCTTGGCT 47429 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACC 111072 || || || || | | || | | | | || |||| || |||||||||||||| Sbjct 47430 TCTGGAGACTCGAAAG-GAAGGCGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACC 47488 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAA 111129 | | ||||||||||||| || | ||| ||||| || |||| || || ||| | Sbjct 47489 GAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAACTGGGTAATA 47545 Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAGTT 111188 || || || | || | || ||| || | ||| | || || || || | Sbjct 47546 GTTGACATCGATAATCTTATTCAAGTTCTTGACGACTA-CTTGGCAGACCTCGTGGAGCT 47604 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 111248 ||| | ||| ||||| ||||| || | ||||| |||| || || | ||||||| Sbjct 47605 TTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAACATATGTTGGGAGAGCAAGCGATGCCA 47664 Query 111249 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGG 111308 ||||||||||||| |||||| | |||||| | ||| || || || ||||||| Sbjct 47665 AATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGCACAAGTTGG 47724 Query 111309 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGA 111368 | || || || || | |||||||||||||||||| |||||| ||||||||||| | Sbjct 47725 AGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAAA 47784 Query 111369 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGG 111428 ||||| | || | || ||||| ||||| | | || |||| | ||||| | || Sbjct 47785 GCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGG 47844 Query 111429 C--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 111485 | || | | | || | ||| | || || | |||||| || || | || || | Sbjct 47845 CTTTGATGCTCTTGC---GACCCTTGCCTTCAGACTCGTATTTCTCATACAAAGCCTCGA 47901 Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 |||| ||||| |||||| | || || || || || || | | | ||| Sbjct 47902 ACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACATCAATGTCCA-- 47959 Query 111546 GACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 111603 | | | ||| ||||| ||||||||||| || ||||| ||||| || | | ||||| Sbjct 47960 GTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAG 48019 Query 111604 ATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 111663 ||| | ||| |||| || | || ||||| ||| | ||||||||||| | | Sbjct 48020 ATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAAC 48079 Query 111664 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGC 111717 ||| ||||||||||||||||| |||| |||| || || ||||| ||| | Sbjct 48080 ATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCACC 48136 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 ||||| ||||| | || ||| ||| || || |||||||| |||| ||| || | || Sbjct 48137 TTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGA 48196 Query 111778 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 | || ||||| ||| |||| || | || | | || | | | || Sbjct 48197 GTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGACC 48256 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 ||||| ||||| |||||| || ||||| | | || | |||||||| | Sbjct 48257 GATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATACCATC 48316 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || ||||||||| || ||||||||||||| || | || | ||||||||| Sbjct 48317 AATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACC 48376 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTAT 112015 ||| |||||| || || | ||||| |||| || ||| ||||||| || ||| Sbjct 48377 AGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAG 48434 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | | ||| || || || || |||||||| |||| || || ||||| | ||| Sbjct 48435 GTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGCGCATAATCATA 48494 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 112134 | ||||| ||| || |||||||||| || | ||||| | || ||| ||||| Sbjct 48495 TGTTGTGGACGTTCACAGATCTTGCCATCGAGGCGGAGGAGATATGATC-GCTCGAGGGT 48553 Query 112135 TTTGAGACCAAAGTA 112149 |||| ||| ||||| Sbjct 48554 CTTGAAACCGAAGTA 48568 >seq476 Length=308794 Score = 120 bits (132), Expect = 4e-22 Identities = 295/444 (66%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| |||||||| ||||| || |||| ||||| ||||||||||| ||| Sbjct 12099 ACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTCTCCATAAAGTCGAAT 12158 Query 122440 GGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGACAC 122498 || || | || ||| | || || | |||||||||||| | || Sbjct 12159 GGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGAGAAAGGAGGAGACGATCGGCGAC 12217 Query 122499 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTGC 122558 |||||||||| | |||| | | |||||| || | || ||| || || || Sbjct 12218 GAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAAGAGC 12277 Query 122559 GTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTC 122618 || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | | Sbjct 12278 CTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCTGC 12337 Query 122619 GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGGA 122674 | | || | || ||| |||||| | |||| || || ||||| Sbjct 12338 CTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAG----AAGGCATGCGAAGTCGGTGTGGA 12393 Query 122675 GACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCT 122734 |||||||||| ||||| || | || || |||||| ||||| | |||||| || |||| Sbjct 12394 GACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCT 12453 Query 122735 TCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 122794 |||||||||| | || | | ||| || || ||||||||||||||| ||| |||| Sbjct 12454 TCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGCAA 12513 Query 122795 ACGCAAAAAGGCGTTCGGCGAAGG 122818 | |||| ||| |||| || |||| Sbjct 12514 AGGCAACAAGACGTTGAGCAAAGG 12537 >seq222 Length=1012068 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||||||||||| |||||| || ||| | | ||| ||| |||||||| Sbjct 850589 GCATCAATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGA 850648 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA-GAGCA 11748 || ||||| || ||||| |||||||||||||||||||| || | | || | | Sbjct 850649 TCTCGAACTCTGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGAACCACTAACG 850708 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || || ||| || ||| || || || || |||| || || | |||||| || || Sbjct 850709 CT-GAAGAAAGGCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGT 850767 Query 11809 ACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| || ||| | || | ||| |||||||| ||||| || || Sbjct 850768 ACCGGGTGGACCAGAAAGGATGGCTCCTCGGGGAATCTTAGCTCC 850812 >seq311 Length=439650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 164657 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 164716 ||| || || || |||||| ||||||| || ||||||||||| | ||||||||||| Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957 Query 164717 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 164774 ||| || ||||| |||||||| ||| | || ||||| | |||||| | ||| | ||| Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAATTGGTCTTGGAG 349015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028043398400