Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq104 212 8e-50 seq476 140 4e-28 >seq104 Length=83277 Score = 212 bits (234), Expect = 8e-50 Identities = 1135/1788 (63%), Gaps = 53/1788 (3%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| || ||| || ||| | | ||||| |||||||| || ||| Sbjct 46740 TCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTC 46799 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 ||||| ||| |||||||| | | |||||| || | ||| | |||||| Sbjct 46800 TTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCC 46859 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | |||| || |||||| ||| |||||||| ||||| || || || || ||||| Sbjct 46860 TTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATC 46919 Query 117978 TCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCAT 118035 | | | | | | | ||| | ||||| || ||| |||| || ||| |||||| Sbjct 46920 TGGACGA--TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAG 46977 Query 118036 CTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATAT 118095 |||| |||| | ||||||||| |||||||| | | || | | |||||| | Sbjct 46978 CTGGAATATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGT 47037 Query 118096 CCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAAC 118153 | |||||||| || || | ||||||| | || ||| | ||||||| Sbjct 47038 TATCGGACCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGT--TGACAACCTG 47095 Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||||| || || ||| |||| ||| || |||| || |||||||| |||||||| Sbjct 47096 GAACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTC 47155 Query 118214 ATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 118272 ||| ||| |||| | | ||| | ||| || ||||| || || | ||| | |||| Sbjct 47156 GTTGAAACC-AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 47214 Query 118273 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT-CCCAGTCGTAGTTGAGCTTT 118331 | |||| || | || ||| ||| ||| | ||| |||| || | || | | Sbjct 47215 TGCGGATGCCGTGTTGAGCAATCTGTTGCTTCA-AGCTAGCCCAATCCCAAA-GATCGGT 47272 Query 118332 --GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 118389 || | | | |||||| ||| | ||||| || | ||| || || || || | Sbjct 47273 AGGTGTAACACC-CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 47331 Query 118390 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 118449 ||||||||||||| || | || | ||||| || | || | || ||||| | Sbjct 47332 ATGTCTCATATGGACCATGAATTTTTGCCAACTCCACGGAAGCAGTCAAAGCAGCGTGGT 47391 Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 118509 | || ||||| || || | || | |||||| || || || || | || | Sbjct 47392 AAATGGTTTCGAAGATTTGGATGTTAAGGTGCTTGGCTTCTGGAGACTCGAAAGGAAGGC 47451 Query 118510 G--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 | | | || || |||| || |||||||| |||||||| |||| || | || | Sbjct 47452 GAAGAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACG 47509 Query 118568 CATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATT 118624 | ||| ||| | || ||| || || ||| | || |||||||| | |||| Sbjct 47510 GAAATTGCTCTTTCTTGC---CTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATT 47566 Query 118625 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 118684 | || ||| ||| || | || || || ||||||| | | ||| || || ||| Sbjct 47567 CAAGTTCTTGACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGT 47626 Query 118685 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744 || || | ||||| | || || || | || |||| ||| || |||| | |||||| Sbjct 47627 CTTCTCGTCAACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATC 47686 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 || |||||| | ||| || ||||||||||| || || ||||| || | || Sbjct 47687 TGGTGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATT 47746 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 |||||| || |||| ||| || |||||||||||||||||| | || | || ||||| Sbjct 47747 CTTTTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTC 47806 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCG 118924 || || | || || |||| | ||| | || ||| | || | | || Sbjct 47807 AGTCTGAGCCTCAAGGATAGAGTACCAAA-----GCTTTTGG-GCTTTGATGCTCTTGCG 47860 Query 118925 CCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC 118978 |||| |||| |||||| || || | || || ||||| ||||| | | || Sbjct 47861 ACCCTTGCCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTC 47920 Query 118979 TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 119038 | | || || || | ||||| | | | ||| | | || ||||| || Sbjct 47921 GGCCAATCCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACG 47980 Query 119039 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 119098 |||||||||||| |||||||||||||| || |||||||||| || ||| | || || Sbjct 47981 CTTCATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTC 48040 Query 119099 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 119158 | || || || || | || | || || | | ||| |||||||| || || || Sbjct 48041 CTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAG 48100 Query 119159 GTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGT 119212 ||| | |||| | || | |||| |||| | || | ||||| || || || Sbjct 48101 GTAGATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGT 48157 Query 119213 GGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 | ||| || || |||||||| |||| || || | ||| | || ||||| ||| ||| Sbjct 48158 GTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAAT 48217 Query 119273 ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 119332 | || | || | || ||| | | | ||| ||||| || || |||||| Sbjct 48218 ATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGA 48277 Query 119333 GATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 119392 || || || | | || ||||||| ||||| || ||| |||| | | Sbjct 48278 AATCATGGCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTC 48337 Query 119393 GATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTG 119451 ||| ||||||||| || | ||| ||||| ||||||||||| |||||| || || | Sbjct 48338 GATAAGGAAGCAGGATGAAAGTTG-TGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGG 48396 Query 119452 TCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAAT 119509 |||||| |||| || ||| ||||||| || ||||||||| | | | || || Sbjct 48397 AGGCGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGAT 48454 Query 119510 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || || ||||| || |||| | || ||||||| ||| | ||| || Sbjct 48455 ATCCTCGCCGTGGATTCCGACAGCAACGCGCATAATCATATGTTGTGG 48502 >seq476 Length=308794 Score = 140 bits (154), Expect = 4e-28 Identities = 306/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Plus Query 129735 CAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCATAAAATCA 129793 |||| ||||||||||||||||| ||||| || | |||| ||| ||||||||||| || Sbjct 12097 CAACACGCTTCTCGAAGAAGTTAGTCTTTCC-TGCAAGAGAGATGTTCTCCATAAAGTCG 12155 Query 129794 AATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCG 129851 |||||||| || ||| | || || | || | |||||||||||| | Sbjct 12156 AATGGGTTGGCAACCTTGTAAACCTTCT--CATTGCCGAGAGAAAGGAGGAGACGATCGG 12213 Query 129852 AGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGA 129911 |||| |||||||||| | |||| | || |||||| || | || ||| || | Sbjct 12214 CGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAA 12273 Query 129912 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGG 129971 | || || | |||| | | |||||| || ||||| || | || ||| || | | Sbjct 12274 GAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 12333 Query 129972 TCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCCTG 130026 || ||| || | || || |||| |||||| | |||| || || Sbjct 12334 CTGCCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAG----AAGGCATGCGAAGTCGGT 12388 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| ||||||||||| | || || |||||| ||||| | |||||| || Sbjct 12389 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 12448 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| || | || |||||| ||||||||| ||||| ||| Sbjct 12449 ACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGC 12508 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || |||| ||||| | |||||||| Sbjct 12509 AGCAAAGGCAACAAGACGTTGAGCAAAGG 12537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431303858240