Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq104 212 8e-50
seq476 140 4e-28
>seq104
Length=83277
Score = 212 bits (234), Expect = 8e-50
Identities = 1135/1788 (63%), Gaps = 53/1788 (3%)
Strand=Plus/Plus
Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857
|||| | ||||||| || ||| || ||| | | ||||| |||||||| || |||
Sbjct 46740 TCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTC 46799
Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917
||||| ||| |||||||| | | |||||| || | ||| | ||||||
Sbjct 46800 TTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCC 46859
Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977
| |||| || |||||| ||| |||||||| ||||| || || || || |||||
Sbjct 46860 TTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATC 46919
Query 117978 TCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCAT 118035
| | | | | | | ||| | ||||| || ||| |||| || ||| ||||||
Sbjct 46920 TGGACGA--TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAG 46977
Query 118036 CTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATAT 118095
|||| |||| | ||||||||| |||||||| | | || | | |||||| |
Sbjct 46978 CTGGAATATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGT 47037
Query 118096 CCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAAC 118153
| |||||||| || || | ||||||| | || ||| | |||||||
Sbjct 47038 TATCGGACCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGT--TGACAACCTG 47095
Query 118154 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213
||||| || || ||| |||| ||| || |||| || |||||||| ||||||||
Sbjct 47096 GAACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTC 47155
Query 118214 ATTGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 118272
||| ||| |||| | | ||| | ||| || ||||| || || | ||| | ||||
Sbjct 47156 GTTGAAACC-AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 47214
Query 118273 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT-CCCAGTCGTAGTTGAGCTTT 118331
| |||| || | || ||| ||| ||| | ||| |||| || | || | |
Sbjct 47215 TGCGGATGCCGTGTTGAGCAATCTGTTGCTTCA-AGCTAGCCCAATCCCAAA-GATCGGT 47272
Query 118332 --GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 118389
|| | | | |||||| ||| | ||||| || | ||| || || || || |
Sbjct 47273 AGGTGTAACACC-CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 47331
Query 118390 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 118449
||||||||||||| || | || | ||||| || | || | || ||||| |
Sbjct 47332 ATGTCTCATATGGACCATGAATTTTTGCCAACTCCACGGAAGCAGTCAAAGCAGCGTGGT 47391
Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 118509
| || ||||| || || | || | |||||| || || || || | || |
Sbjct 47392 AAATGGTTTCGAAGATTTGGATGTTAAGGTGCTTGGCTTCTGGAGACTCGAAAGGAAGGC 47451
Query 118510 G--GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567
| | | || || |||| || |||||||| |||||||| |||| || | || |
Sbjct 47452 GAAGAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACG 47509
Query 118568 CATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATT 118624
| ||| ||| | || ||| || || ||| | || |||||||| | ||||
Sbjct 47510 GAAATTGCTCTTTCTTGC---CTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATT 47566
Query 118625 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGT 118684
| || ||| ||| || | || || || ||||||| | | ||| || || |||
Sbjct 47567 CAAGTTCTTGACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGT 47626
Query 118685 CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744
|| || | ||||| | || || || | || |||| ||| || |||| | ||||||
Sbjct 47627 CTTCTCGTCAACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATC 47686
Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804
|| |||||| | ||| || ||||||||||| || || ||||| || | ||
Sbjct 47687 TGGTGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATT 47746
Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864
|||||| || |||| ||| || |||||||||||||||||| | || | || |||||
Sbjct 47747 CTTTTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTC 47806
Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCG 118924
|| || | || || |||| | ||| | || ||| | || | | ||
Sbjct 47807 AGTCTGAGCCTCAAGGATAGAGTACCAAA-----GCTTTTGG-GCTTTGATGCTCTTGCG 47860
Query 118925 CCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC 118978
|||| |||| |||||| || || | || || ||||| ||||| | | ||
Sbjct 47861 ACCCTTGCCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTC 47920
Query 118979 TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 119038
| | || || || | ||||| | | | ||| | | || ||||| ||
Sbjct 47921 GGCCAATCCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACG 47980
Query 119039 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 119098
|||||||||||| |||||||||||||| || |||||||||| || ||| | || ||
Sbjct 47981 CTTCATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTC 48040
Query 119099 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 119158
| || || || || | || | || || | | ||| |||||||| || || ||
Sbjct 48041 CTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAG 48100
Query 119159 GTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGT 119212
||| | |||| | || | |||| |||| | || | ||||| || || ||
Sbjct 48101 GTAGATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGT 48157
Query 119213 GGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272
| ||| || || |||||||| |||| || || | ||| | || ||||| ||| |||
Sbjct 48158 GTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAAT 48217
Query 119273 ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGA 119332
| || | || | || ||| | | | ||| ||||| || || ||||||
Sbjct 48218 ATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGA 48277
Query 119333 GATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGC 119392
|| || || | | || ||||||| ||||| || ||| |||| | |
Sbjct 48278 AATCATGGCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTC 48337
Query 119393 GATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTG 119451
||| ||||||||| || | ||| ||||| ||||||||||| |||||| || || |
Sbjct 48338 GATAAGGAAGCAGGATGAAAGTTG-TGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGG 48396
Query 119452 TCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAAT 119509
|||||| |||| || ||| ||||||| || ||||||||| | | | || ||
Sbjct 48397 AGGCGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGAT 48454
Query 119510 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557
|| || ||||| || |||| | || ||||||| ||| | ||| ||
Sbjct 48455 ATCCTCGCCGTGGATTCCGACAGCAACGCGCATAATCATATGTTGTGG 48502
>seq476
Length=308794
Score = 140 bits (154), Expect = 4e-28
Identities = 306/449 (68%), Gaps = 16/449 (4%)
Strand=Plus/Plus
Query 129735 CAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCATAAAATCA 129793
|||| ||||||||||||||||| ||||| || | |||| ||| ||||||||||| ||
Sbjct 12097 CAACACGCTTCTCGAAGAAGTTAGTCTTTCC-TGCAAGAGAGATGTTCTCCATAAAGTCG 12155
Query 129794 AATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCG 129851
|||||||| || ||| | || || | || | |||||||||||| |
Sbjct 12156 AATGGGTTGGCAACCTTGTAAACCTTCT--CATTGCCGAGAGAAAGGAGGAGACGATCGG 12213
Query 129852 AGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGA 129911
|||| |||||||||| | |||| | || |||||| || | || ||| || |
Sbjct 12214 CGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAA 12273
Query 129912 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGG 129971
| || || | |||| | | |||||| || ||||| || | || ||| || | |
Sbjct 12274 GAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 12333
Query 129972 TCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCCTG 130026
|| ||| || | || || |||| |||||| | |||| || ||
Sbjct 12334 CTGCCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAG----AAGGCATGCGAAGTCGGT 12388
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
|||||||||||| ||||||||||| | || || |||||| ||||| | |||||| ||
Sbjct 12389 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 12448
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
||||||||||||||||| || | || |||||| ||||||||| ||||| |||
Sbjct 12449 ACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGC 12508
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || |||| ||||| | ||||||||
Sbjct 12509 AGCAAAGGCAACAAGACGTTGAGCAAAGG 12537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618431303858240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |