Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq104 280 2e-70
seq476 118 1e-21
seq222 91.5 2e-13
seq311 86.0 7e-12
>seq104
Length=83277
Score = 280 bits (310), Expect = 2e-70
Identities = 1182/1830 (65%), Gaps = 65/1830 (4%)
Strand=Plus/Minus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214
|| || ||| |||| ||||| ||| || | ||||| | || |||||||| | |||
Sbjct 48568 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 48513
Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271
||| ||||| | ||| | |||||||| || |||| || || || || || ||
Sbjct 48512 CTGTGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATAT 48453
Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329
|| ||| | | ||||| ||| || ||||||| ||| || |||| ||||| |
Sbjct 48452 CGAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCC 48395
Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389
|| || |||||| |||||||||||| | ||| | || ||||||||||||| |
Sbjct 48394 CCCACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGAC 48335
Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449
| ||||||||| || | |||||||| | || | | ||||| || |||
Sbjct 48334 ATGAAGGAGGACAGCATTGATGGTATCTACGACACATTGAAAATTTGTGCCATGATTTCA 48275
Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509
||| ||||| ||||| || | | | || | | || | || ||||
Sbjct 48274 AAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACGGGTGCTTATATT 48215
Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569
||| ||||| || | || | || ||| |||| |||||||| || || ||| |||
Sbjct 48214 GCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACC 48155
Query 104570 GCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTT 104623
|| | ||||| |||||| ||| ||||| || || |||| |||| |||
Sbjct 48154 GCTAGATATGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTT 48098
Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683
|||||||||||||| ||| | | ||||||||||| | || ||||| || | |||
Sbjct 48097 GAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAG 48038
Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743
|||| || ||| |||||||||| |||||||||||| |||||||||||||||||| |
Sbjct 48037 GAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGT 47978
Query 104744 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGAT 104803
||||| ||| | ||| | | | || || || || ||||| | ||||
Sbjct 47977 GTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCGAC 47918
Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863
| | ||||| ||||| || || | || || |||||| ||||| | | | |
Sbjct 47917 GTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGG-CAAGGGTC- 47860
Query 104864 GC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921
|| || | ||| | | ||| | |||| || || |||| || ||||| |
Sbjct 47859 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACCG 47800
Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981
| | || | |||||||||||| || || || |||| ||||||||| ||||||||| | |
Sbjct 47799 GAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTCG 47740
Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039
|| ||| || ||||| | || || || || | || ||| | || ||||||
Sbjct 47739 GTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCAGATGA 47682
Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-AGACAA 105098
| ||||| || || | ||||| | |||||||| | ||||| || | || ||||
Sbjct 47681 GGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGA-CGAGAAGACTG 47623
Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158
|| | ||| | |||| |||||||| || || ||| ||| ||| | || |
Sbjct 47622 CCACTTATGACTTCCAAAAGCTCCACGAGGTCTGCCAAGTAGTCGTCAAGAACTTGAATA 47563
Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGAC 105215
|||| ||| || | |||||| || |||| || | || ||| | | |
Sbjct 47562 AGATTATCGATGTCAACTATTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTC 47506
Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG 105275
|| | || |||| |||||||||||| ||||| || |||| ||| | | |||||
Sbjct 47505 ACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGCCTTC 47446
Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
| || || || ||||| ||| | | || | || || || ||||| || ||||
Sbjct 47445 CTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTACCACG 47386
Query 105336 CCGCTCTTGAGGCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392
| ||| |||| | ||| ||||||||| | || ||||||||||||| || |
Sbjct 47385 CTGCT-TTGA--CTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGACATACC 47329
Query 105393 AGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451
| || || || || || |||||| | ||| |||| ||| ||||||| || | ||| |
Sbjct 47328 AAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCTAC 47271
Query 105452 C-TTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 105509
| || | || |||| |||| | ||| ||| || | | || | || ||||
Sbjct 47270 CGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATTGCTCAACACGGCATCCGCAACA 47212
Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569
|| | ||| | ||||| |||||||| ||| ||| || || | ||| || || |
Sbjct 47211 GTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAACGAGT 47152
Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 105629
|||| || || || || | ||||| ||| || | ||| || |||||||| |
Sbjct 47151 GCTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTTCCAGG 47092
Query 105630 TTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687
|||||||| ||| || | | || || || || || ||||||||| | | ||
Sbjct 47091 TTGTCAAC--CCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACAT 47034
Query 105688 GAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAA 105743
|||| | | ||| || ||| ||||| || || |||||| || ||||||||
Sbjct 47033 GAAGAACCGTATCATTGCTGA----CGGTGGATCAATCCAAAATGTTCCAAATATTCCAG 46978
Query 105744 ATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGA 105801
||| || ||| | ||| || |||||||| | ||| | | | | || | |
Sbjct 46977 CTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCCA 46920
Query 105802 CATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGA 105861
||||| || || |||||| |||||||||||| |||| ||||| || |||| |
Sbjct 46919 GATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAA 46860
Query 105862 AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAA 105921
||||| ||| ||| || | |||||| | | |||||| |||||||||
Sbjct 46859 GGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGTCTCAA 46800
Query 105922 AACGGGGATGTATTACCTCCGATCTAAGGC 105951
|| || ||||| || ||||| ||| |||
Sbjct 46799 GACTGGAATGTACTATCTCCGTACTATGGC 46770
>seq476
Length=308794
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||||| || || | |||||||| ||||||||| | ||| | | |||| | |
Sbjct 12599 AGTTCCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATC 12540
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
| |||||||| | || || | || ||||| ||||||||||||||||||| ||| |
Sbjct 12539 -TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
| ||| | | || | ||| | |||||||| || |||||| | ||||| ||||||||
Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
||||| | ||||| ||||| ||||| ||||||
Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 12389
>seq222
Length=1012068
Score = 91.5 bits (100), Expect = 2e-13
Identities = 223/334 (67%), Gaps = 18/334 (5%)
Strand=Plus/Plus
Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665
|| ||| |||||||||||||| ||||||| || || | ||| || || |||||||
Sbjct 850485 CAGTATTGAAACCATCCATCTCGGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCATCAT 850544
Query 9666 T--CGCTGGCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAA 9719
| | | || | | ||||| | | | |||||| | |||||||| |||||||
Sbjct 850545 TTCCACCACCAAATGAACCAGCTTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAA 850604
Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779
|||||| || || || ||| | | || | | |||||||||| || || | |
Sbjct 850605 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGATCTCGAACTCTGGAAG 850664
Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATT-----GGATGAAGG 9833
| || |||||||||||||||||||| || | ||||| || | || ||| |
Sbjct 850665 CACCAACACCAACAAACATCTCCACGAACT------CGGAACCACTAACGCTGAAGAAAG 850718
Query 9834 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9893
| ||| || || || || |||| || || | |||||||| ||||| || ||
Sbjct 850719 GCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGTACCGGGTGGAC 850778
Query 9894 CCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
| | |||| ||| ||||| |||||||| || ||
Sbjct 850779 CAGAAAGGATGGCTCCTCGGGGAATCTTAGCTCC 850812
>seq311
Length=439650
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/139 (75%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 154159 TGGTGCGGGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCA 154218
||| || || || ||||| |||||||| || ||||||||||| | || ||||||||
Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957
Query 154219 CGGAGACAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTT-GAGA 154277
||| || ||||| |||||||| ||| ||| || || | |||||| ||| |||| ||||
Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAA-TTGGTCTTGGAGA 349016
Query 154278 GGTGTGAGACACCCGATGT 154296
| | |||||||| ||
Sbjct 349017 GAATCTACACACCCGAGGT 349035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257125456960
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