Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq104 280 2e-70 seq476 118 1e-21 seq222 91.5 2e-13 seq311 86.0 7e-12 >seq104 Length=83277 Score = 280 bits (310), Expect = 2e-70 Identities = 1182/1830 (65%), Gaps = 65/1830 (4%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || || ||| |||| ||||| ||| || | ||||| | || |||||||| | ||| Sbjct 48568 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGCCTCGATGG---CAAGAT 48513 Query 104215 G---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 ||| ||||| | ||| | |||||||| || |||| || || || || || || Sbjct 48512 CTGTGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATAT 48453 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 || ||| | | ||||| ||| || ||||||| ||| || |||| ||||| | Sbjct 48452 CGAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCC 48395 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 || || |||||| |||||||||||| | ||| | || ||||||||||||| | Sbjct 48394 CCCACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGAC 48335 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| || | |||||||| | || | | ||||| || ||| Sbjct 48334 ATGAAGGAGGACAGCATTGATGGTATCTACGACACATTGAAAATTTGTGCCATGATTTCA 48275 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||||| ||||| || | | | || | | || | || |||| Sbjct 48274 AAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACGGGTGCTTATATT 48215 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 ||| ||||| || | || | || ||| |||| |||||||| || || ||| ||| Sbjct 48214 GCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACC 48155 Query 104570 GCGCGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTT 104623 || | ||||| |||||| ||| ||||| || || |||| |||| ||| Sbjct 48154 GCTAGATATGTTGATCAAGGTGGTAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTT 48098 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 |||||||||||||| ||| | | ||||||||||| | || ||||| || | ||| Sbjct 48097 GAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAG 48038 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 |||| || ||| |||||||||| |||||||||||| |||||||||||||||||| | Sbjct 48037 GAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGT 47978 Query 104744 GTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGAT 104803 ||||| ||| | ||| | | | || || || || ||||| | |||| Sbjct 47977 GTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCGAC 47918 Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 | | ||||| ||||| || || | || || |||||| ||||| | | | | Sbjct 47917 GTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGG-CAAGGGTC- 47860 Query 104864 GC--GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 || || | ||| | | ||| | |||| || || |||| || ||||| | Sbjct 47859 GCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACCG 47800 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||||||||||| || || || |||| ||||||||| ||||||||| | | Sbjct 47799 GAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTCG 47740 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039 || ||| || ||||| | || || || || | || ||| | || |||||| Sbjct 47739 GTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCAGATGA 47682 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-AGACAA 105098 | ||||| || || | ||||| | |||||||| | ||||| || | || |||| Sbjct 47681 GGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGA-CGAGAAGACTG 47623 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 || | ||| | |||| |||||||| || || ||| ||| ||| | || | Sbjct 47622 CCACTTATGACTTCCAAAAGCTCCACGAGGTCTGCCAAGTAGTCGTCAAGAACTTGAATA 47563 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGAC 105215 |||| ||| || | |||||| || |||| || | || ||| | | | Sbjct 47562 AGATTATCGATGTCAACTATTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTC 47506 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG 105275 || | || |||| |||||||||||| ||||| || |||| ||| | | ||||| Sbjct 47505 ACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGCCTTC 47446 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 | || || || ||||| ||| | | || | || || || ||||| || |||| Sbjct 47445 CTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTACCACG 47386 Query 105336 CCGCTCTTGAGGCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 | ||| |||| | ||| ||||||||| | || ||||||||||||| || | Sbjct 47385 CTGCT-TTGA--CTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGACATACC 47329 Query 105393 AGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 | || || || || || |||||| | ||| |||| ||| ||||||| || | ||| | Sbjct 47328 AAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACACCTAC 47271 Query 105452 C-TTCACTACGACTGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 105509 | || | || |||| |||| | ||| ||| || | | || | || |||| Sbjct 47270 CGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATTGCTCAACACGGCATCCGCAACA 47212 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 || | ||| | ||||| |||||||| ||| ||| || || | ||| || || | Sbjct 47211 GTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAACGAGT 47152 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 105629 |||| || || || || | ||||| ||| || | ||| || |||||||| | Sbjct 47151 GCTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTTCCAGG 47092 Query 105630 TTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 |||||||| ||| || | | || || || || || ||||||||| | | || Sbjct 47091 TTGTCAAC--CCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACAT 47034 Query 105688 GAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAA 105743 |||| | | ||| || ||| ||||| || || |||||| || |||||||| Sbjct 47033 GAAGAACCGTATCATTGCTGA----CGGTGGATCAATCCAAAATGTTCCAAATATTCCAG 46978 Query 105744 ATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGA 105801 ||| || ||| | ||| || |||||||| | ||| | | | | || | | Sbjct 46977 CTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCCA 46920 Query 105802 CATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGA 105861 ||||| || || |||||| |||||||||||| |||| ||||| || |||| | Sbjct 46919 GATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAA 46860 Query 105862 AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAA 105921 ||||| ||| ||| || | |||||| | | |||||| ||||||||| Sbjct 46859 GGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGTCTCAA 46800 Query 105922 AACGGGGATGTATTACCTCCGATCTAAGGC 105951 || || ||||| || ||||| ||| ||| Sbjct 46799 GACTGGAATGTACTATCTCCGTACTATGGC 46770 >seq476 Length=308794 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | |||||||| ||||||||| | ||| | | |||| | | Sbjct 12599 AGTTCCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATC 12540 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | |||||||| | || || | || ||||| ||||||||||||||||||| ||| | Sbjct 12539 -TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | ||| | | || | ||| | |||||||| || |||||| | ||||| |||||||| Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| | ||||| ||||| ||||| |||||| Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 12389 >seq222 Length=1012068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/334 (67%), Gaps = 18/334 (5%) Strand=Plus/Plus Query 9606 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9665 || ||| |||||||||||||| ||||||| || || | ||| || || ||||||| Sbjct 850485 CAGTATTGAAACCATCCATCTCGGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCATCAT 850544 Query 9666 T--CGCTGGCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAA 9719 | | | || | | ||||| | | | |||||| | |||||||| ||||||| Sbjct 850545 TTCCACCACCAAATGAACCAGCTTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAA 850604 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779 |||||| || || || ||| | | || | | |||||||||| || || | | Sbjct 850605 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGATCTCGAACTCTGGAAG 850664 Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATT-----GGATGAAGG 9833 | || |||||||||||||||||||| || | ||||| || | || ||| | Sbjct 850665 CACCAACACCAACAAACATCTCCACGAACT------CGGAACCACTAACGCTGAAGAAAG 850718 Query 9834 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9893 | ||| || || || || |||| || || | |||||||| ||||| || || Sbjct 850719 GCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGTACCGGGTGGAC 850778 Query 9894 CCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 | | |||| ||| ||||| |||||||| || || Sbjct 850779 CAGAAAGGATGGCTCCTCGGGGAATCTTAGCTCC 850812 >seq311 Length=439650 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 154159 TGGTGCGGGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCA 154218 ||| || || || ||||| |||||||| || ||||||||||| | || |||||||| Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957 Query 154219 CGGAGACAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTT-GAGA 154277 ||| || ||||| |||||||| ||| ||| || || | |||||| ||| |||| |||| Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAA-TTGGTCTTGGAGA 349016 Query 154278 GGTGTGAGACACCCGATGT 154296 | | |||||||| || Sbjct 349017 GAATCTACACACCCGAGGT 349035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257125456960