Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq18 140 1e-27
seq24 134 4e-26
seq454 131 5e-25
seq68 95.1 4e-14
seq46 93.3 1e-13
>seq18
Length=186891
Score = 140 bits (154), Expect = 1e-27
Identities = 178/244 (73%), Gaps = 1/244 (0%)
Strand=Plus/Minus
Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554
|| ||||||| |||||||||||| | | || || | |||||| || ||||| |||||
Sbjct 167463 ACAAATATTTG-CATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTG 167405
Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614
||||| || || || || ||||| ||||| || | ||| || || || || || || ||
Sbjct 167404 GATATTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCG 167345
Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674
|| || ||||| || || || || ||||||||||| || | ||||| || || || |
Sbjct 167344 CTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGT 167285
Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734
||| || | |||||| || | || | |||||||| || || || || || || || ||
Sbjct 167284 ATCTGAAGATTCAACCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTG 167225
Query 140735 CATT 140738
||||
Sbjct 167224 CATT 167221
Score = 111 bits (122), Expect = 5e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || | ||||| || ||||| || || || || |
Sbjct 166944 TTTGCATACCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGT 166885
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || || || || || ||||||||||| | |||||||||||
Sbjct 166884 AATCAGAGAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGAT 166825
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || ||||| || || ||| || || || || || | || ||
Sbjct 166824 CTGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCGGAC 166766
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
| || || ||||| || | ||||| ||||| | |||
Sbjct 166765 GACTCCACCTCAAGGGTGATAGTCTTACCGGTAACTGT 166728
Score = 111 bits (122), Expect = 5e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | ||||| | || |||||||||||||| ||||| || |
Sbjct 167228 TTTGCATTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGT 167169
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || |||||||| || ||||||||||| |||||||| || |
Sbjct 167168 AGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGT 167109
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || || || || || | || || || || || | ||| |
Sbjct 167108 CCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCG 167049
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || || || || | ||||| |||||
Sbjct 167048 ATTCGACCTCGAGGGTGATAGTCTTGCCGGT 167018
Score = 102 bits (112), Expect = 2e-16
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || ||||| ||| |||||||| || ||||| | ||| || ||||| || |
Sbjct 167656 CAAG-TGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCA 167598
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
||| || || || || || | || || || || || ||||| || || |||||||| |
Sbjct 167597 ATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGA 167538
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | || ||||||||||| | || || | |||||||| | ||||| ||||| |
Sbjct 167537 TCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGC 167478
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || | || || ||||| || |||||
Sbjct 167477 CCGTCAAAGTCTTGACAAATATTTGCAT 167450
>seq24
Length=734891
Score = 134 bits (148), Expect = 4e-26
Identities = 227/329 (69%), Gaps = 0/329 (0%)
Strand=Plus/Minus
Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179
||| || ||||| || || || |||||||||||| | | |||| || ||
Sbjct 286593 ATCCAACCCATCCTCGCCGTAGACGAATTGAACAATATCGCCGAGGGAATTTCGGACTGT 286534
Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239
||||||| | | || | ||| || | ||| || | ||| || || |||||||||
Sbjct 286533 TCCATCATATTTGGCAATGACATCCTCAAGTGCCTTGACAAGACGGCGTTGAATATAACC 286474
Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299
||||| | ||| || ||||| ||||| || | ||| |||||||| |||| || |||||
Sbjct 286473 AGTTTCAGCAGTCTTCACTGCGGTATCGATGAGACCTTCACGACCAGCCATGGCGTGGAA 286414
Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359
|| || || || || || | |||| || | |||| | |||| ||||||||||| |
Sbjct 286413 AAAGAACTCGGTTGGTGTTAACCCACGAAGATATGAGTTTTCAACAAATCCTCTTGATTC 286354
Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419
||| || | ||||| ||||| ||||||| | ||| || | | || || | |||||
Sbjct 286353 TGGGGAGTAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAAGCCGAAAGGAAT 286294
Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAA 378448
|| ||||| || ||| || |||||||
Sbjct 286293 ACGCTTTCCTTCCACAGATTGCTGACCAA 286265
Score = 104 bits (114), Expect = 7e-17
Identities = 109/143 (76%), Gaps = 3/143 (2%)
Strand=Plus/Minus
Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505
||||||| | || ||||||||| | || || ||| || || | ||||| |||||
Sbjct 287288 ATTTCTTTTAGACGAGGCACACCAAGGGTGACGTTC---TTCGAAGACACACCTGCAAAA 287232
Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565
||||||||||| || || | ||| || | ||| || ||||| || || || |||| ||
Sbjct 287231 TGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAGCAGCAAGGACT 287172
Query 377566 CCAACCATTTCTCCAGGATTGAC 377588
|||||||||||||||||||||||
Sbjct 287171 CCAACCATTTCTCCAGGATTGAC 287149
>seq454
Length=373842
Score = 131 bits (144), Expect = 5e-25
Identities = 672/1058 (64%), Gaps = 33/1058 (3%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| ||| | ||||| ||||||||||| || || |||| | ||||| || ||||||
Sbjct 242643 GCAGTTGTCACTGTCCCAGCCTATTTCAACGACAACCAGAGACAAGCAACCAAGGATGCT 242702
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| | |||||| || || || || || | || |||| || ||||| || ||||| ||
Sbjct 242703 GGTATCATTGCCGGTTTGAACGTCCTCCGCATCGTTAACGAGCCCACCGCCGCAGCTATC 242762
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | || | | || | | | || || | | ||| | |||
Sbjct 242763 GCCTACGGTCTTGACAA---GGTTGGCAAGGAGAGACAAATCATTGTCTACGATCTCGGT 242819
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
|| || || || ||||| || || || | ||||||| || |||| || ||| |
Sbjct 242820 GGAGGAACCTTCGATGTTTCCCTCCTCTCTATTGAAGATGGTGTTTTCGAGGTTCTTTCT 242879
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
|| |||||||| || ||| | ||||| || ||||| || | ||| || | || ||
Sbjct 242880 ACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGACCAACGTATCATCAACCACTTC 242939
Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAA----ATTGATATTGGAGATAATC-CTAGAGCAA 349964
| ||||| | | |||| | | ||||||| | ||| | ||| | |
Sbjct 242940 G-CCAAGAAGT---ACAACAAGGAACACTCCGTTGATATCACCAAGGATCTCAAGA-CCA 242994
Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATC---TACTACCC 350021
|| || |||| || | ||| || |||||| || | || || | |||
Sbjct 242995 TGGGTAAACTAAAGCGTGAGGCTGAGAAGGCCAAGCGTACCCTTTCTTCCCAAAAGACC- 243053
Query 350022 AAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACAC 350081
||| ||||||||| || || | ||||||| ||||||| | || |||| |
Sbjct 243054 --ACCCGTATTGAAATCGAGGCTTTCCACAATGGCAACGATTTCTCTGAGACTCTTACCC 243111
Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA-ACAATGGATCCTGTGGAA 350140
|||| ||| || ||||| ||||| ||| || || | || || | ||||| ||
Sbjct 243112 GTGCCAAGTTCGAGGAATTGAACATGGA-CTTGTTCAAGAAGACCTTGAAGCCTGTCGAG 243170
Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGA--TTGATGAAGTAGTTTTAGTTG 350198
| || | || ||||| || ||| | || ||| |||| || | || |||||||
Sbjct 243171 CAGGTTCTTAAGGATGC--TAAGGTCAAGAAGGGAGAAGTTGACGACATCGTCTTAGTTG 243228
Query 350199 GTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAG 350258
|||||||||| || |||||||| ||| | | || |||| || | ||| ||||
Sbjct 243229 GTGGTTCTACCCGCATTCCAAAGGTTGTTGACATGATAGAAGAGTACTTCAGTGG-AAAG 243287
Query 350259 AA-CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCA 350317
|| |||| | ||||| || ||||| ||||| || | ||||| |||||||| |
Sbjct 243288 AAGGCTTCCAAGGGTATTAACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGT 243347
Query 350318 TCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACT 350377
| | | || || | | || | || || | | | || | ||||| |
Sbjct 243348 GGTGTCCTTTCCGGTGAGGAAGGT------ACTGGTGGTATTGTTCTTATGGATGTCAAC 243401
Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437
||| | | ||||| | || || | || | || ||||| | || || |||||
Sbjct 243402 CCATTGACTCTTGGTATCGAGACCACCGGAGGTGTCATGACCAAGTTGATCCCAAGAAAC 243461
Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497
| | | || || || | |||| ||| || || || ||||| |||||||
Sbjct 243462 ACTGTCATCCCAACCCGCAAAGCACAAATTTTCTCCACCGCCGCCGATAACCAGCCAGTA 243521
Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557
|| || || || ||||| || || | || |||||||| ||||| | || |||
Sbjct 243522 GTCTTGATCCAGGTCTTTGAGGGAGAGAGAACTATGACTAAAGACAATAACCAGCTCGGA 243581
Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617
| || || | | || ||||| ||| ||||||||||||| ||||| ||||||
Sbjct 243582 AAGTTCGAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATTGAGGTCTCT 243641
Query 350618 TTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655
||||| |||| | || || || ||||| ||||||||
Sbjct 243642 TTCGAGCTTGACGCCAACGGAATCTTAAAGGTTACCGC 243679
Score = 84.2 bits (92), Expect = 7e-11
Identities = 135/192 (70%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 349193 AAAACCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAAT 349252
|||| | ||| || ||||||||||| || || || |||||||| | ||| ||| |||
Sbjct 242171 AAAATAGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAAT 242230
Query 349253 GATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCA 349312
| || ||||| | | ||| || ||||| |||||| || ||||||||||| |||
Sbjct 242231 GGAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATACGTCGCA 242290
Query 349313 TTTACCGAAACTGAGCGTATGATT----GGTGATTCTGCAAAAAATCAAGCTGCTGCTAA 349368
|||||||| ||| | | |||| || || | || || || || ||||||| ||
Sbjct 242291 TTTACCGA---CGAG-GAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAA 242346
Query 349369 TCCAAAAAATAC 349380
||||| || ||
Sbjct 242347 CCCAAAGAACAC 242358
>seq68
Length=676023
Score = 95.1 bits (104), Expect = 4e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
||||| |||||||| || || || || || ||||| | | | | ||||||| |
Sbjct 624731 ATAGGTATCGATTTCGGGACCACCTACTCCTGTGTGGGCATCTATCGTGATGATCGAATT 624672
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|||||||| | ||||||||||| ||| |||| || ||||| | ||| || || || ||
Sbjct 624671 GAAATAATCGACAATGATCAAGGCAACCGAACCACCCCATCCTTCGTCGCTTTCACTGAT 624612
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAA 349353
||||||||| |||| ||||| ||| ||| ||
Sbjct 624611 ACTGAGCGTCTGATCGGTGACGCTGTAAAGAA 624580
>seq46
Length=702932
Score = 93.3 bits (102), Expect = 1e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
||||| || || || || || | || || ||||| |||||||| |||||||| |||||
Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| |||||| || || || ||||| || || || ||||| || || | |||||||||||
Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729
Query 140670 ATCGAATCAGA 140680
|| | ||| ||
Sbjct 219730 ATGGTATCCGA 219740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515244615244712
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