Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq18 140 1e-27 seq24 134 4e-26 seq454 131 5e-25 seq68 95.1 4e-14 seq46 93.3 1e-13 >seq18 Length=186891 Score = 140 bits (154), Expect = 1e-27 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| |||||||||||| | | || || | |||||| || ||||| ||||| Sbjct 167463 ACAAATATTTG-CATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTG 167405 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||||| || || || || ||||| ||||| || | ||| || || || || || || || Sbjct 167404 GATATTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCG 167345 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 || || ||||| || || || || ||||||||||| || | ||||| || || || | Sbjct 167344 CTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGT 167285 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 ||| || | |||||| || | || | |||||||| || || || || || || || || Sbjct 167284 ATCTGAAGATTCAACCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTG 167225 Query 140735 CATT 140738 |||| Sbjct 167224 CATT 167221 Score = 111 bits (122), Expect = 5e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || | ||||| || ||||| || || || || | Sbjct 166944 TTTGCATACCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGT 166885 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || || || || || ||||||||||| | ||||||||||| Sbjct 166884 AATCAGAGAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGAT 166825 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || ||||| || || ||| || || || || || | || || Sbjct 166824 CTGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCGGAC 166766 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || || ||||| || | ||||| ||||| | ||| Sbjct 166765 GACTCCACCTCAAGGGTGATAGTCTTACCGGTAACTGT 166728 Score = 111 bits (122), Expect = 5e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| | || |||||||||||||| ||||| || | Sbjct 167228 TTTGCATTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGT 167169 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| || ||||||||||| |||||||| || | Sbjct 167168 AGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGT 167109 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || || || || || | || || || || || | ||| | Sbjct 167108 CCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCG 167049 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || || | ||||| ||||| Sbjct 167048 ATTCGACCTCGAGGGTGATAGTCTTGCCGGT 167018 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||| |||||||| || ||||| | ||| || ||||| || | Sbjct 167656 CAAG-TGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCA 167598 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 ||| || || || || || | || || || || || ||||| || || |||||||| | Sbjct 167597 ATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGA 167538 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || ||||||||||| | || || | |||||||| | ||||| ||||| | Sbjct 167537 TCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGC 167478 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || || ||||| || ||||| Sbjct 167477 CCGTCAAAGTCTTGACAAATATTTGCAT 167450 >seq24 Length=734891 Score = 134 bits (148), Expect = 4e-26 Identities = 227/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||| || ||||| || || || |||||||||||| | | |||| || || Sbjct 286593 ATCCAACCCATCCTCGCCGTAGACGAATTGAACAATATCGCCGAGGGAATTTCGGACTGT 286534 Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239 ||||||| | | || | ||| || | ||| || | ||| || || ||||||||| Sbjct 286533 TCCATCATATTTGGCAATGACATCCTCAAGTGCCTTGACAAGACGGCGTTGAATATAACC 286474 Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299 ||||| | ||| || ||||| ||||| || | ||| |||||||| |||| || ||||| Sbjct 286473 AGTTTCAGCAGTCTTCACTGCGGTATCGATGAGACCTTCACGACCAGCCATGGCGTGGAA 286414 Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359 || || || || || || | |||| || | |||| | |||| ||||||||||| | Sbjct 286413 AAAGAACTCGGTTGGTGTTAACCCACGAAGATATGAGTTTTCAACAAATCCTCTTGATTC 286354 Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419 ||| || | ||||| ||||| ||||||| | ||| || | | || || | ||||| Sbjct 286353 TGGGGAGTAATCATCCTTTGTGAAATGAGGAAGTGTTCGGTATTTGAAGCCGAAAGGAAT 286294 Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAA 378448 || ||||| || ||| || ||||||| Sbjct 286293 ACGCTTTCCTTCCACAGATTGCTGACCAA 286265 Score = 104 bits (114), Expect = 7e-17 Identities = 109/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || ||||||||| | || || ||| || || | ||||| ||||| Sbjct 287288 ATTTCTTTTAGACGAGGCACACCAAGGGTGACGTTC---TTCGAAGACACACCTGCAAAA 287232 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||||||||| || || | ||| || | ||| || ||||| || || || |||| || Sbjct 287231 TGGAAAGTATTGAGCGTCATTTGCGTCGCGGGTTCTCCAATAGATTGAGCAGCAAGGACT 287172 Query 377566 CCAACCATTTCTCCAGGATTGAC 377588 ||||||||||||||||||||||| Sbjct 287171 CCAACCATTTCTCCAGGATTGAC 287149 >seq454 Length=373842 Score = 131 bits (144), Expect = 5e-25 Identities = 672/1058 (64%), Gaps = 33/1058 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || ||| | ||||| ||||||||||| || || |||| | ||||| || |||||| Sbjct 242643 GCAGTTGTCACTGTCCCAGCCTATTTCAACGACAACCAGAGACAAGCAACCAAGGATGCT 242702 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || | |||||| || || || || || | || |||| || ||||| || ||||| || Sbjct 242703 GGTATCATTGCCGGTTTGAACGTCCTCCGCATCGTTAACGAGCCCACCGCCGCAGCTATC 242762 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | || | | || | | | || || | | ||| | ||| Sbjct 242763 GCCTACGGTCTTGACAA---GGTTGGCAAGGAGAGACAAATCATTGTCTACGATCTCGGT 242819 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || || || || ||||| || || || | ||||||| || |||| || ||| | Sbjct 242820 GGAGGAACCTTCGATGTTTCCCTCCTCTCTATTGAAGATGGTGTTTTCGAGGTTCTTTCT 242879 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || ||| | ||||| || ||||| || | ||| || | || || Sbjct 242880 ACCGCTGGTGACACCCATTTGGGTGGTGAGGATTTCGACCAACGTATCATCAACCACTTC 242939 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAA----ATTGATATTGGAGATAATC-CTAGAGCAA 349964 | ||||| | | |||| | | ||||||| | ||| | ||| | | Sbjct 242940 G-CCAAGAAGT---ACAACAAGGAACACTCCGTTGATATCACCAAGGATCTCAAGA-CCA 242994 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATC---TACTACCC 350021 || || |||| || | ||| || |||||| || | || || | ||| Sbjct 242995 TGGGTAAACTAAAGCGTGAGGCTGAGAAGGCCAAGCGTACCCTTTCTTCCCAAAAGACC- 243053 Query 350022 AAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACAC 350081 ||| ||||||||| || || | ||||||| ||||||| | || |||| | Sbjct 243054 --ACCCGTATTGAAATCGAGGCTTTCCACAATGGCAACGATTTCTCTGAGACTCTTACCC 243111 Query 350082 GTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCA-ACAATGGATCCTGTGGAA 350140 |||| ||| || ||||| ||||| ||| || || | || || | ||||| || Sbjct 243112 GTGCCAAGTTCGAGGAATTGAACATGGA-CTTGTTCAAGAAGACCTTGAAGCCTGTCGAG 243170 Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGA--TTGATGAAGTAGTTTTAGTTG 350198 | || | || ||||| || ||| | || ||| |||| || | || ||||||| Sbjct 243171 CAGGTTCTTAAGGATGC--TAAGGTCAAGAAGGGAGAAGTTGACGACATCGTCTTAGTTG 243228 Query 350199 GTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAG 350258 |||||||||| || |||||||| ||| | | || |||| || | ||| |||| Sbjct 243229 GTGGTTCTACCCGCATTCCAAAGGTTGTTGACATGATAGAAGAGTACTTCAGTGG-AAAG 243287 Query 350259 AA-CCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCA 350317 || |||| | ||||| || ||||| ||||| || | ||||| |||||||| | Sbjct 243288 AAGGCTTCCAAGGGTATTAACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGT 243347 Query 350318 TCTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACT 350377 | | | || || | | || | || || | | | || | ||||| | Sbjct 243348 GGTGTCCTTTCCGGTGAGGAAGGT------ACTGGTGGTATTGTTCTTATGGATGTCAAC 243401 Query 350378 CCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAAT 350437 ||| | | ||||| | || || | || | || ||||| | || || ||||| Sbjct 243402 CCATTGACTCTTGGTATCGAGACCACCGGAGGTGTCATGACCAAGTTGATCCCAAGAAAC 243461 Query 350438 AGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCG 350497 | | | || || || | |||| ||| || || || ||||| ||||||| Sbjct 243462 ACTGTCATCCCAACCCGCAAAGCACAAATTTTCTCCACCGCCGCCGATAACCAGCCAGTA 243521 Query 350498 GTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGA 350557 || || || || ||||| || || | || |||||||| ||||| | || ||| Sbjct 243522 GTCTTGATCCAGGTCTTTGAGGGAGAGAGAACTATGACTAAAGACAATAACCAGCTCGGA 243581 Query 350558 GAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCT 350617 | || || | | || ||||| ||| ||||||||||||| ||||| |||||| Sbjct 243582 AAGTTCGAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATTGAGGTCTCT 243641 Query 350618 TTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 ||||| |||| | || || || ||||| |||||||| Sbjct 243642 TTCGAGCTTGACGCCAACGGAATCTTAAAGGTTACCGC 243679 Score = 84.2 bits (92), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 349193 AAAACCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAAT 349252 |||| | ||| || ||||||||||| || || || |||||||| | ||| ||| ||| Sbjct 242171 AAAATAGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAAT 242230 Query 349253 GATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCA 349312 | || ||||| | | ||| || ||||| |||||| || ||||||||||| ||| Sbjct 242231 GGAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATACGTCGCA 242290 Query 349313 TTTACCGAAACTGAGCGTATGATT----GGTGATTCTGCAAAAAATCAAGCTGCTGCTAA 349368 |||||||| ||| | | |||| || || | || || || || ||||||| || Sbjct 242291 TTTACCGA---CGAG-GAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAA 242346 Query 349369 TCCAAAAAATAC 349380 ||||| || || Sbjct 242347 CCCAAAGAACAC 242358 >seq68 Length=676023 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 ||||| |||||||| || || || || || ||||| | | | | ||||||| | Sbjct 624731 ATAGGTATCGATTTCGGGACCACCTACTCCTGTGTGGGCATCTATCGTGATGATCGAATT 624672 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 |||||||| | ||||||||||| ||| |||| || ||||| | ||| || || || || Sbjct 624671 GAAATAATCGACAATGATCAAGGCAACCGAACCACCCCATCCTTCGTCGCTTTCACTGAT 624612 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAA 349353 ||||||||| |||| ||||| ||| ||| || Sbjct 624611 ACTGAGCGTCTGATCGGTGACGCTGTAAAGAA 624580 >seq46 Length=702932 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || || || || | || || ||||| |||||||| |||||||| ||||| Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | |||||| || || || ||||| || || || ||||| || || | ||||||||||| Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729 Query 140670 ATCGAATCAGA 140680 || | ||| || Sbjct 219730 ATGGTATCCGA 219740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515244615244712