Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq104 212 7e-50 seq476 120 3e-22 >seq104 Length=83277 Score = 212 bits (234), Expect = 7e-50 Identities = 560/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Plus Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 |||||||||| ||||| || || ||| || || | | ||||| || || ||| Sbjct 47655 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTG 47714 Query 79114 CACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGG 79171 ||||| || || ||| |||||| |||| ||||| ||||| ||||| ||| || | Sbjct 47715 CACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAG 47772 Query 79172 CGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCC 79231 | |||||||| |||| | || | ||||||||| |||| || || | || || Sbjct 47773 CATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACC 47832 Query 79232 AGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC-----GAC--GTACGTC 79284 | | | |||| || ||||| ||||||| ||| ||| ||| || Sbjct 47833 AAAGCTTTTGGGCTTTGATGC---TCTTG---CGACCCT-TGCCTTCAGACTCGTATTTC 47885 Query 79285 CGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG 79344 ||||| | | ||| | || || ||||| |||| || || || ||||||| ||| Sbjct 47886 TCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGG 47945 Query 79345 CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCAC 79404 ||||||| |||||| || ||| ||||| || ||||||||| || |||||||| Sbjct 47946 CACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAG 48005 Query 79405 AGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCG 79464 || || |||||| || ||| ||| | |||||| | || |||||| || || || Sbjct 48006 AGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCA 48065 Query 79465 AGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGC 79524 || || || | | || |||||||| ||||| || ||||||||||| | ||| ||| Sbjct 48066 AGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 48125 Query 79525 TTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACG 79584 ||| || || || | || || | || ||||||||||||||||| |||||||| || Sbjct 48126 TTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACA 48185 Query 79585 ATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGA 79643 || |||| || | ||||| || || || | ||| |||| | || | | || Sbjct 48186 ATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGA 48245 Query 79644 GCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTC 79703 || | || ||||| || || | ||| || || || || || | || || Sbjct 48246 ACA-TTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTC 48304 Query 79704 GTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG 79763 |||||| || || || ||| |||||||| ||| ||||||||| || | |||| Sbjct 48305 GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 48364 Query 79764 GT-TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCA 79822 | || | ||||| || |||||| || || | ||||| |||||| | || | || Sbjct 48365 CTGTGGT-GTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACA 48423 Query 79823 TCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGC 79882 ||| | ||| ||||| || | | || || ||||||||||| ||||| || |||| Sbjct 48424 TCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGC 48483 Query 79883 GCAT 79886 |||| Sbjct 48484 GCAT 48487 Score = 179 bits (198), Expect = 4e-40 Identities = 406/603 (67%), Gaps = 8/603 (1%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || ||||| ||||| ||||| || || | | | |||||| ||| || Sbjct 48487 ATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGAGGCTGCCATCGAGACCTACAAC 48428 Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236 ||||| |||| || | |||||| ||||| | || || || ||| || ||||| | Sbjct 48427 TTGATGT-CCAGCAAATACTTCACCCACGCCTCCCCCACACTCTTCGCAGCTGGTAC--A 48371 Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 | || ||| | | || ||| ||||| | | |||||||| ||||||||||| || Sbjct 48370 CCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGT 48311 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 |||||||| || | || || || || || ||| | || |||||||| || Sbjct 48310 ATCTACGACACATTGAAAATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTC 48251 Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 | || || | | |||| ||| ||| | || || || |||||| || | Sbjct 48250 AA-TGTTCACAGAATCCGTGCGACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAA 48192 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| || || || ||||| || || ||||||||||| || || || || | || || || Sbjct 48191 CGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGG 48132 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | |||||||||||||| |||||||||||||| || || | || Sbjct 48131 TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGA 48072 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || || || |||||| || | |||||| | || || || |||||| Sbjct 48071 GTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 48012 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 || | ||||| || || || |||||| || ||||| ||| || || ||| | Sbjct 48011 CGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATT 47952 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713 ||||||||| |||| || ||||| | ||||||||||||| || | |||| | | || Sbjct 47951 GATGTGCCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGTTCGAGGCTTT 47892 Query 19714 GTA 19716 ||| Sbjct 47891 GTA 47889 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | ||||||||| || |||||||||||| |||||| || | |||||||| Sbjct 46776 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTG 46835 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| ||| | |||| || |||| |||||| | || || || || || ||| Sbjct 46836 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 46895 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| |||||||| ||||| | || || | ||| | |||||||| | |||| Sbjct 46896 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTC 46955 Query 78370 CGGTAAATGGCCTT 78383 ||||| ||||| Sbjct 46956 TTGTAAAGAGCCTT 46969 >seq476 Length=308794 Score = 120 bits (132), Expect = 3e-22 Identities = 305/456 (67%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| |||||||| | || ||||| ||| || || || ||||||||| |||||| || Sbjct 12535 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTT 12477 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | || |||||| | || ||||||||||||||| | || || | ||||||||||| Sbjct 12476 CGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGA 12417 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150 | |||| ||||| || ||||| ||||| || || ||| || | |||| || ||| Sbjct 12416 GTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCA-TGCCTTCTCTTCTCTCAC- 12359 Query 60151 TATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGT--TCAGTG-GGCTTGTGAAG 60207 ||| | | |||| ||||| | || || ||| | |||| ||| Sbjct 12358 --TTGAAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGA 12301 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||| |||||| | || || || ||||| || || | || ||| |||| Sbjct 12300 TTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAACT 12241 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTC-----ATGGCCCAGTTTGGAGA 60322 |||| ||| |||||| |||| ||||| || || ||| | | | | |||| Sbjct 12240 TGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAATGAGA 12181 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 ||| ||||| || ||||| ||||||| ||||||| |||||| | | ||| Sbjct 12180 AGG-----TTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGG 12126 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||| |||||||| |||||||| || | ||||| Sbjct 12125 AAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTA 12090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521344293760