Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq104 212 7e-50
seq476 120 3e-22
>seq104
Length=83277
Score = 212 bits (234), Expect = 7e-50
Identities = 560/844 (66%), Gaps = 22/844 (3%)
Strand=Plus/Plus
Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113
|||||||||| ||||| || || ||| || || | | ||||| || || |||
Sbjct 47655 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTG 47714
Query 79114 CACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGG 79171
||||| || || ||| |||||| |||| ||||| ||||| ||||| ||| || |
Sbjct 47715 CACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAG 47772
Query 79172 CGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCC 79231
| |||||||| |||| | || | ||||||||| |||| || || | || ||
Sbjct 47773 CATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACC 47832
Query 79232 AGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC-----GAC--GTACGTC 79284
| | | |||| || ||||| ||||||| ||| ||| ||| ||
Sbjct 47833 AAAGCTTTTGGGCTTTGATGC---TCTTG---CGACCCT-TGCCTTCAGACTCGTATTTC 47885
Query 79285 CGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG 79344
||||| | | ||| | || || ||||| |||| || || || ||||||| |||
Sbjct 47886 TCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGG 47945
Query 79345 CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCAC 79404
||||||| |||||| || ||| ||||| || ||||||||| || ||||||||
Sbjct 47946 CACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAG 48005
Query 79405 AGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCG 79464
|| || |||||| || ||| ||| | |||||| | || |||||| || || ||
Sbjct 48006 AGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCA 48065
Query 79465 AGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGC 79524
|| || || | | || |||||||| ||||| || ||||||||||| | ||| |||
Sbjct 48066 AGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 48125
Query 79525 TTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACG 79584
||| || || || | || || | || ||||||||||||||||| |||||||| ||
Sbjct 48126 TTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACA 48185
Query 79585 ATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC-CCGAATGTTCGA 79643
|| |||| || | ||||| || || || | ||| |||| | || | | ||
Sbjct 48186 ATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGA 48245
Query 79644 GCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTC 79703
|| | || ||||| || || | ||| || || || || || | || ||
Sbjct 48246 ACA-TTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTC 48304
Query 79704 GTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG 79763
|||||| || || || ||| |||||||| ||| ||||||||| || | ||||
Sbjct 48305 GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 48364
Query 79764 GT-TGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCA 79822
| || | ||||| || |||||| || || | ||||| |||||| | || | ||
Sbjct 48365 CTGTGGT-GTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACA 48423
Query 79823 TCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGC 79882
||| | ||| ||||| || | | || || ||||||||||| ||||| || ||||
Sbjct 48424 TCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGC 48483
Query 79883 GCAT 79886
||||
Sbjct 48484 GCAT 48487
Score = 179 bits (198), Expect = 4e-40
Identities = 406/603 (67%), Gaps = 8/603 (1%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177
||||| || || ||||| ||||| ||||| || || | | | |||||| ||| ||
Sbjct 48487 ATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGAGGCTGCCATCGAGACCTACAAC 48428
Query 19178 CTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAA 19236
||||| |||| || | |||||| ||||| | || || || ||| || ||||| |
Sbjct 48427 TTGATGT-CCAGCAAATACTTCACCCACGCCTCCCCCACACTCTTCGCAGCTGGTAC--A 48371
Query 19237 CAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
| || ||| | | || ||| ||||| | | |||||||| ||||||||||| ||
Sbjct 48370 CCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGT 48311
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|||||||| || | || || || || || ||| | || |||||||| ||
Sbjct 48310 ATCTACGACACATTGAAAATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTC 48251
Query 19355 CACTGCTCGAATA-TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
| || || | | |||| ||| ||| | || || || |||||| || |
Sbjct 48250 AA-TGTTCACAGAATCCGTGCGACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAA 48192
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| || || || ||||| || || ||||||||||| || || || || | || || ||
Sbjct 48191 CGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGG 48132
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | |||||||||||||| |||||||||||||| || || | ||
Sbjct 48131 TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGA 48072
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | |||||| | || || || ||||||
Sbjct 48071 GTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTA 48012
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
|| | ||||| || || || |||||| || ||||| ||| || || ||| |
Sbjct 48011 CGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATT 47952
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTT 19713
||||||||| |||| || ||||| | ||||||||||||| || | |||| | | ||
Sbjct 47951 GATGTGCCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGTTCGAGGCTTT 47892
Query 19714 GTA 19716
|||
Sbjct 47891 GTA 47889
Score = 89.7 bits (98), Expect = 6e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| || | ||||||||| || |||||||||||| |||||| || | ||||||||
Sbjct 46776 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTG 46835
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | ||| ||| | |||| || |||| |||||| | || || || || || |||
Sbjct 46836 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 46895
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
| ||||| |||||||| ||||| | || || | ||| | |||||||| | ||||
Sbjct 46896 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTC 46955
Query 78370 CGGTAAATGGCCTT 78383
||||| |||||
Sbjct 46956 TTGTAAAGAGCCTT 46969
>seq476
Length=308794
Score = 120 bits (132), Expect = 3e-22
Identities = 305/456 (67%), Gaps = 20/456 (4%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| |||||||| | || ||||| ||| || || || ||||||||| |||||| ||
Sbjct 12535 TTTGCTCAACGTCTTGTTGCCTTTGC-TGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTT 12477
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | || |||||| | || ||||||||||||||| | || || | |||||||||||
Sbjct 12476 CGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGA 12417
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC 60150
| |||| ||||| || ||||| ||||| || || ||| || | |||| || |||
Sbjct 12416 GTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCA-TGCCTTCTCTTCTCTCAC- 12359
Query 60151 TATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGT--TCAGTG-GGCTTGTGAAG 60207
||| | | |||| ||||| | || || ||| | |||| |||
Sbjct 12358 --TTGAAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGA 12301
Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267
| ||| |||||| | || || || ||||| || || | || ||| ||||
Sbjct 12300 TTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAACT 12241
Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTC-----ATGGCCCAGTTTGGAGA 60322
|||| ||| |||||| |||| ||||| || || ||| | | | | ||||
Sbjct 12240 TGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAATGAGA 12181
Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382
||| ||||| || ||||| ||||||| ||||||| |||||| | | |||
Sbjct 12180 AGG-----TTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGG 12126
Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||||| |||||||| |||||||| || | |||||
Sbjct 12125 AAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTA 12090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548521344293760
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