Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq104 176 5e-39
seq456 116 4e-21
seq476 104 3e-17
>seq104
Length=83277
Score = 176 bits (194), Expect = 5e-39
Identities = 397/591 (67%), Gaps = 8/591 (1%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
|||||||| || | || |||||||| || || | | || | ||||| ||| ||
Sbjct 48487 ATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGAGGCTGCCATCGAGACCTACAAC 48428
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
|| ||| | || ||||| || |||||| | || || || ||| ||||||||
Sbjct 48427 TTGATGTCCAGCAAATACTTCACCCACGCCTCCCCCACACTCTTCGCAGCTGGTACACCA 48368
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| | || | || ||||||||| | | |||||||| ||| || || || |||
Sbjct 48367 CAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGTATC 48308
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || | || |||||| || || ||| | |||||||||||| || |
Sbjct 48307 TACGACACATTGAAAATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTCAA- 48249
Query 53435 TGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
|| || ||| ||||||||| || | || ||| || ||||| | || |
Sbjct 48248 TGTTCACAGAA--TCCGTGCGACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAAC 48191
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
||||| || || ||||| || || ||||||||||| || | || || | || ||||||
Sbjct 48190 GGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGGT 48131
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | |||||||||||||| ||||| |||||||| || || | |||
Sbjct 48130 AACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGAG 48071
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670
|| || || || || ||| || || | || ||| | || |||||| || || |||
Sbjct 48070 TTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTAC 48011
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
||||| ||||| || || ||||||||| | || || ||| || || ||| |
Sbjct 48010 -GCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATT 47952
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
||||||||| |||||||| || || | | ||||||||||| |||||
Sbjct 47951 GATGTGCCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGTT 47901
>seq456
Length=366132
Score = 116 bits (128), Expect = 4e-21
Identities = 299/446 (67%), Gaps = 12/446 (3%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| ||||| || || || ||||| || | |||| ||| ||||||| |||| ||| | |
Sbjct 287700 CCAGTACCAATTCCATCGGCACCATTAATAAGAACCATTGGCACAACAGGGCAGTACATC 287759
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCAC-GTATTTCAAAACGGAATTGTCAGC--C 151992
| ||||| | || | || || |||| ||| || || ||| || | ||| |
Sbjct 287760 ACTGGCTCAATCTTCTTTCCATCGTCCA-CACTGTGTTCGTAAATGGGCTCATCAAGTAC 287818
Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052
|| ||||| |||| | | || ||| | ||| || ||||| || | || |||
Sbjct 287819 TGA--GAATACTCGTCTCGCGAACGGCGACAATCTCGTAAAAATGTAACGAGGACTTGCC 287876
Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112
||||| |||| ||||| || || | ||||| | |||| || ||||| ||| | |
Sbjct 287877 GCATCAGTGCCTCCTGCGAGACGACTACCAAAATTTCCACTTGGTTCGAGACAGTTTATG 287936
Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTC 152171
||||| | || || ||||| || || || | | | |||||| |||| | |||||
Sbjct 287937 TTGTTAGATCCGACAAAATTTTGCGC-AAGTCCGATAATCGTTTGATGCATAGAAGCTTC 287995
Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231
||||||||| || || || | || | || |||||| |||||| | |||||||||| ||
Sbjct 287996 ACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCCACCCAACTCCACCACCTTCATATC 288055
Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| ||||| ||| | ||| || | || ||||| || ||| ||||| ||
Sbjct 288056 --TCGAACGAGGTTGCGCTTAAAACAAGCAAACATGACCTTTCGTTGGCCAGGTTTGAAC 288113
Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315
||||| | || |||||| |||||
Sbjct 288114 CCGTCGATTACAGAAGGAATAGAACG 288139
Score = 84.2 bits (92), Expect = 2e-11
Identities = 172/251 (69%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||||||||||| ||||| ||||| |||| || || ||||| |||| || | |
Sbjct 287853 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCTGCGAGACGACTACCAAAATTT 287912
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423
||||| || || | ||| | |||||| | || ||||| ||||| | ||||| ||
Sbjct 287913 CCACTTGGTTCGAGACAGTTTATGTTGTTAGATCCGACAAAATTTTGCG-CAAGTCCGAT 287971
Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483
|||||| || | || ||||| ||||| || || || | || | ||||| ||
Sbjct 287972 AATCGTTTGATGCATAGAAGCTTCACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCC 288031
Query 117484 CGCCAGCTGAGCCACCTTCATGTCT--GACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541
||| || |||||||||| ||| ||| ||||| ||| | || ||| | ||
Sbjct 288032 ACCCAACTCCACCACCTTCATATCTCGAACG--AGGTTGCGCTTAAAACAAGCAAACATG 288089
Query 117542 ACCTTGCGCTG 117552
||||| || ||
Sbjct 288090 ACCTTTCGTTG 288100
>seq476
Length=308794
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
||||| || || || || | ||| |||| ||| || ||||||||||||||||| ||||||
Sbjct 12411 ATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATG 12470
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| ||| || |||||||||||||| || || ||| |||||||| ||||| |||||
Sbjct 12471 GAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGA 12530
Query 74904 GCGAA 74908
|| ||
Sbjct 12531 GCAAA 12535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212552539200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |