Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq104 176 5e-39 seq456 116 4e-21 seq476 104 3e-17 >seq104 Length=83277 Score = 176 bits (194), Expect = 5e-39 Identities = 397/591 (67%), Gaps = 8/591 (1%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 |||||||| || | || |||||||| || || | | || | ||||| ||| || Sbjct 48487 ATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGAGGCTGCCATCGAGACCTACAAC 48428 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| | || ||||| || |||||| | || || || ||| |||||||| Sbjct 48427 TTGATGTCCAGCAAATACTTCACCCACGCCTCCCCCACACTCTTCGCAGCTGGTACACCA 48368 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | || | || ||||||||| | | |||||||| ||| || || || ||| Sbjct 48367 CAGGCACAACTTTCATCCTGCTTCCTTATCGACATGAAGGAGGACAGCATTGATGGTATC 48308 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || | || |||||| || || ||| | |||||||||||| || | Sbjct 48307 TACGACACATTGAAAATTTGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTCAA- 48249 Query 53435 TGCTC---GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || || ||| ||||||||| || | || ||| || ||||| | || | Sbjct 48248 TGTTCACAGAA--TCCGTGCGACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAAC 48191 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 ||||| || || ||||| || || ||||||||||| || | || || | || |||||| Sbjct 48190 GGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGGT 48131 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | |||||||||||||| ||||| |||||||| || || | ||| Sbjct 48130 AACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGAG 48071 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || || || || || ||| || || | || ||| | || |||||| || || ||| Sbjct 48070 TTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTAC 48011 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||||| || || ||||||||| | || || ||| || || ||| | Sbjct 48010 -GCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATT 47952 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||||||| |||||||| || || | | ||||||||||| ||||| Sbjct 47951 GATGTGCCCCAACGAGTGTCCTGGATTGGCCGACGTCTACGGTGACGAGTT 47901 >seq456 Length=366132 Score = 116 bits (128), Expect = 4e-21 Identities = 299/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||| || | |||| ||| ||||||| |||| ||| | | Sbjct 287700 CCAGTACCAATTCCATCGGCACCATTAATAAGAACCATTGGCACAACAGGGCAGTACATC 287759 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCAC-GTATTTCAAAACGGAATTGTCAGC--C 151992 | ||||| | || | || || |||| ||| || || ||| || | ||| | Sbjct 287760 ACTGGCTCAATCTTCTTTCCATCGTCCA-CACTGTGTTCGTAAATGGGCTCATCAAGTAC 287818 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || ||||| |||| | | || ||| | ||| || ||||| || | || ||| Sbjct 287819 TGA--GAATACTCGTCTCGCGAACGGCGACAATCTCGTAAAAATGTAACGAGGACTTGCC 287876 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 ||||| |||| ||||| || || | ||||| | |||| || ||||| ||| | | Sbjct 287877 GCATCAGTGCCTCCTGCGAGACGACTACCAAAATTTCCACTTGGTTCGAGACAGTTTATG 287936 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTC-ACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||| | || || ||||| || || || | | | |||||| |||| | ||||| Sbjct 287937 TTGTTAGATCCGACAAAATTTTGCGC-AAGTCCGATAATCGTTTGATGCATAGAAGCTTC 287995 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || || | || | || |||||| |||||| | |||||||||| || Sbjct 287996 ACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCCACCCAACTCCACCACCTTCATATC 288055 Query 152232 CGTCG--TCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| ||| | ||| || | || ||||| || ||| ||||| || Sbjct 288056 --TCGAACGAGGTTGCGCTTAAAACAAGCAAACATGACCTTTCGTTGGCCAGGTTTGAAC 288113 Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315 ||||| | || |||||| ||||| Sbjct 288114 CCGTCGATTACAGAAGGAATAGAACG 288139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| ||||| ||||| |||| || || ||||| |||| || | | Sbjct 287853 GTAAAAATGTAACGAGGACTTGCCGCATCAGTGCCTCCTGCGAGACGACTACCAAAATTT 287912 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT-TGAC 117423 ||||| || || | ||| | |||||| | || ||||| ||||| | ||||| || Sbjct 287913 CCACTTGGTTCGAGACAGTTTATGTTGTTAGATCCGACAAAATTTTGCG-CAAGTCCGAT 287971 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 |||||| || | || ||||| ||||| || || || | || | ||||| || Sbjct 287972 AATCGTTTGATGCATAGAAGCTTCACCGTGGTGGTAAGCAGTGTTTTCTGAGACGTATCC 288031 Query 117484 CGCCAGCTGAGCCACCTTCATGTCT--GACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 ||| || |||||||||| ||| ||| ||||| ||| | || ||| | || Sbjct 288032 ACCCAACTCCACCACCTTCATATCTCGAACG--AGGTTGCGCTTAAAACAAGCAAACATG 288089 Query 117542 ACCTTGCGCTG 117552 ||||| || || Sbjct 288090 ACCTTTCGTTG 288100 >seq476 Length=308794 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || || || || | ||| |||| ||| || ||||||||||||||||| |||||| Sbjct 12411 ATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATG 12470 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| || |||||||||||||| || || ||| |||||||| ||||| ||||| Sbjct 12471 GAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGA 12530 Query 74904 GCGAA 74908 || || Sbjct 12531 GCAAA 12535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212552539200