Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq104 176 5e-39
seq18 168 8e-37
seq30 120 3e-22
seq46 100 3e-16
>seq104
Length=83277
Score = 176 bits (194), Expect = 5e-39
Identities = 556/850 (65%), Gaps = 25/850 (3%)
Strand=Plus/Plus
Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961
|| || |||| |||||| || || ||||| || | || | ||| |||||| || ||
Sbjct 47655 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCA-CAGTA--CTCGACAATCTCA 47711
Query 80962 GTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019
|||||||| || || ||| || ||||| || || || ||||| ||| |||||
Sbjct 47712 GTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGC 47769
Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079
|||| |||||||| |||| | ||| | |||||||| ||| | || ||||| | ||
Sbjct 47770 AAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGT 47829
Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139
||||| || | || |||| |||||| |||||||| | | | || || | |
Sbjct 47830 ACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCAT 47889
Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199
| | ||||||| | |||||| | || | | | || |||||||| |||||||
Sbjct 47890 ACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACA 47949
Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259
||| |||||| || || || ||| ||||||||| || ||||||||||| |
Sbjct 47950 TCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAG 48009
Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319
|| ||| || || ||| || ||||||| | || ||||| || | || || |
Sbjct 48010 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 48069
Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373
| || | | || || ||||||||||| || || | ||||| | || | ||||
Sbjct 48070 ACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGT 48129
Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
| ||||| || | || || | || || ||| || || || | ||| || | |
Sbjct 48130 TA---CCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAA 48186
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCT 81491
| || | || | ||||| |||||| | ||| | ||| | || || | | ||
Sbjct 48187 TTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAA 48246
Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551
|||| |||||||| ||||| | |||||||||| ||||| |||| || ||
Sbjct 48247 CATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTC 48304
Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611
|| || || || ||||| || | |||||||| | | ||| ||| ||| | || |
Sbjct 48305 GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 48364
Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671
| || || || ||| ||||| |||| ||||| |||| || | | |||||
Sbjct 48365 CTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACAT 48424
Query 81672 CAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
|| || ||||| || || | || | | ||||| || ||||| || |||| ||| || |
Sbjct 48425 CAAGTTGTAGGTCTCGATGGCAGCCTCG-ATATCCTCGCCGTGGATTCCGACAGCAACGC 48483
Query 81731 GCATAAACAT 81740
|||||| |||
Sbjct 48484 GCATAATCAT 48493
>seq18
Length=186891
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| |||||||| ||||| || ||||| || || | |||||||| ||
Sbjct 167221 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTC 167280
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | || | ||| | || |||||||| |||||||| || || || |||||
Sbjct 167281 AGATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 167340
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| || ||||| || || |||||| | ||||||| || ||| | | ||||| ||
Sbjct 167341 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 167400
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||||| ||||| |||||| | ||| | |||||||| |||||
Sbjct 167401 TATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 167448
Score = 145 bits (160), Expect = 9e-30
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||||||||| | || |||||||||||||| | || ||||||||
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || || ||||| |||||||| ||||| ||||||||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | ||||| || || |||||| | ||||||| ||||| || ||| || || ||
Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGC-GATTACAA 167628
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| |||||||| |||||| || | || | || ||||| || ||||||
Sbjct 167629 CATTCAAAAGGAGAGCACTCTGCACTTGGTGCTTCGCCTTCGTGGAGGACAA 167680
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| | |||||||||||||| || || ||||| || || | |||| ||| |
Sbjct 167006 GTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGAC 167065
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || || ||||||||||| || || || ||||| || ||||| ||
Sbjct 167066 AACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATC 167125
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
||||||||||||||||| ||||| | || ||||| | ||||| || | || || ||
Sbjct 167126 TTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAG 167185
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||||| || | || | ||||| || ||||||
Sbjct 167186 TCTACTCTCCACTTGGTTCTCCGTCTCCGTGGTGGA 167221
Score = 131 bits (144), Expect = 2e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||| |||||||| || |||||||| ||||| || | || | || | |||
Sbjct 166732 TTACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGA 166791
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|| || |||||||||||||| ||||| ||||| ||||| ||| | || |||||||| |
Sbjct 166792 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCA 166851
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
|||| |||||||| | || || || | || || || |||| ||||| ||||| ||||
Sbjct 166852 AGCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTC 166911
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | ||| | |||||||| || ||
Sbjct 166912 ACTTGGTCCTCCGTCTTCGTGGCGG 166936
>seq30
Length=167504
Score = 120 bits (132), Expect = 3e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||||||||| || || || || || ||||| || || || |||
Sbjct 89531 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 89590
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|||||||| || | |||||||| | ||||| || |||| ||||| || || ||||||
Sbjct 89591 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 89650
Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||||| ||||| || || |||
Sbjct 89651 CTCGTCTTACGTCTACGTGGAGGA 89674
>seq46
Length=702932
Score = 100 bits (110), Expect = 3e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || |||||||||||||| ||||| || |||||
Sbjct 219737 GATACCATCGATAATGTAAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAA 219678
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || ||||| |||||||| ||||||| || || || ||||||| ||
Sbjct 219677 CAACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTCTTTCAGACTACAAC 219618
Query 27586 GTCCAAAAGG 27595
|||||||||
Sbjct 219617 ATCCAAAAGG 219608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306807044480
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