Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq104 176 5e-39 seq18 168 8e-37 seq30 120 3e-22 seq46 100 3e-16 >seq104 Length=83277 Score = 176 bits (194), Expect = 5e-39 Identities = 556/850 (65%), Gaps = 25/850 (3%) Strand=Plus/Plus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCC 80961 || || |||| |||||| || || ||||| || | || | ||| |||||| || || Sbjct 47655 AGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCA-CAGTA--CTCGACAATCTCA 47711 Query 80962 GTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGC 81019 |||||||| || || ||| || ||||| || || || ||||| ||| ||||| Sbjct 47712 GTGCACAAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGC 47769 Query 81020 AAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGT 81079 |||| |||||||| |||| | ||| | |||||||| ||| | || ||||| | || Sbjct 47770 AAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGT 47829 Query 81080 CCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139 ||||| || | || |||| |||||| |||||||| | | | || || | | Sbjct 47830 ACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCAT 47889 Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | | ||||||| | |||||| | || | | | || |||||||| ||||||| Sbjct 47890 ACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACA 47949 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 ||| |||||| || || || ||| ||||||||| || ||||||||||| | Sbjct 47950 TCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAG 48009 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||| || || ||| || ||||||| | || ||||| || | || || | Sbjct 48010 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGA 48069 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | | || || ||||||||||| || || | ||||| | || | |||| Sbjct 48070 ACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGT 48129 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 | ||||| || | || || | || || ||| || || || | ||| || | | Sbjct 48130 TA---CCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAA 48186 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCT 81491 | || | || | ||||| |||||| | ||| | ||| | || || | | || Sbjct 48187 TTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAA 48246 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 |||| |||||||| ||||| | |||||||||| ||||| |||| || || Sbjct 48247 CATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTC 48304 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || || || || ||||| || | |||||||| | | ||| ||| ||| | || | Sbjct 48305 GTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGC 48364 Query 81612 GCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671 | || || || ||| ||||| |||| ||||| |||| || | | ||||| Sbjct 48365 CTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACAT 48424 Query 81672 CAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 || || ||||| || || | || | | ||||| || ||||| || |||| ||| || | Sbjct 48425 CAAGTTGTAGGTCTCGATGGCAGCCTCG-ATATCCTCGCCGTGGATTCCGACAGCAACGC 48483 Query 81731 GCATAAACAT 81740 |||||| ||| Sbjct 48484 GCATAATCAT 48493 >seq18 Length=186891 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| || ||||| || || | |||||||| || Sbjct 167221 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTC 167280 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || | ||| | || |||||||| |||||||| || || || ||||| Sbjct 167281 AGATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 167340 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || ||||| || || |||||| | ||||||| || ||| | | ||||| || Sbjct 167341 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 167400 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||| ||||| |||||| | ||| | |||||||| ||||| Sbjct 167401 TATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 167448 Score = 145 bits (160), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || |||||||||||||| | || |||||||| Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || ||||| |||||||| ||||| |||||||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | ||||| || || |||||| | ||||||| ||||| || ||| || || || Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGC-GATTACAA 167628 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | |||||||| |||||| || | || | || ||||| || |||||| Sbjct 167629 CATTCAAAAGGAGAGCACTCTGCACTTGGTGCTTCGCCTTCGTGGAGGACAA 167680 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| | |||||||||||||| || || ||||| || || | |||| ||| | Sbjct 167006 GTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGAC 167065 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || || ||||||||||| || || || ||||| || ||||| || Sbjct 167066 AACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATC 167125 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||||||||||||||| ||||| | || ||||| | ||||| || | || || || Sbjct 167126 TTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAG 167185 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| || | || | ||||| || |||||| Sbjct 167186 TCTACTCTCCACTTGGTTCTCCGTCTCCGTGGTGGA 167221 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||| |||||||| || |||||||| ||||| || | || | || | ||| Sbjct 166732 TTACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGA 166791 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || |||||||||||||| ||||| ||||| ||||| ||| | || |||||||| | Sbjct 166792 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCA 166851 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| |||||||| | || || || | || || || |||| ||||| ||||| |||| Sbjct 166852 AGCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTC 166911 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||| | |||||||| || || Sbjct 166912 ACTTGGTCCTCCGTCTTCGTGGCGG 166936 >seq30 Length=167504 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| || || || || || ||||| || || || ||| Sbjct 89531 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 89590 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| || | |||||||| | ||||| || |||| ||||| || || |||||| Sbjct 89591 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 89650 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||| ||||| || || ||| Sbjct 89651 CTCGTCTTACGTCTACGTGGAGGA 89674 >seq46 Length=702932 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || || |||||||||||||| ||||| || ||||| Sbjct 219737 GATACCATCGATAATGTAAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAA 219678 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || ||||| |||||||| ||||||| || || || ||||||| || Sbjct 219677 CAACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTCTTTCAGACTACAAC 219618 Query 27586 GTCCAAAAGG 27595 ||||||||| Sbjct 219617 ATCCAAAAGG 219608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306807044480