Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 122 5e-23 seq46 87.8 1e-12 seq30 84.2 1e-11 >seq18 Length=186891 Score = 122 bits (134), Expect = 5e-23 Identities = 183/256 (71%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 34453 TCTGAACAAATACATATCCAATCGTCG-CCGCCTCTAAGACGCAACACCAAATGGAGAGT 34511 || ||| ||||| || || || | | || || | ||| || | |||||| || ||||| Sbjct 167704 TCCGAAAAAATATGTACACACTCATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGT 167645 Query 34512 GCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGC 34571 |||||||||||||||||| ||||| ||||| || | || || | ||| || ||||| Sbjct 167644 GCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGC 167585 Query 34572 AAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAA 34631 || || || ||||||||||| || || | |||||||| || |||| |||| || | Sbjct 167584 GAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATC-TTTGACTTGA 167526 Query 34632 CGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTT 34690 | || ||||||||| ||| ||||||| || || || || || || || || | Sbjct 167525 CATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCT 167466 Query 34691 TCACAAAAATCTGCAT 34706 | ||||| || ||||| Sbjct 167465 TGACAAATATTTGCAT 167450 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||| ||| || |||||||| || || ||||| || || Sbjct 167211 AGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGG 167152 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| |||||||| ||||| ||||| || | ||| ||||||||||| || | |||||| Sbjct 167151 CCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCC 167092 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 167091 TTGTCTTGGATCTT 167078 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| || || ||| |||||| || ||||| ||||| || Sbjct 166936 CCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAG 166877 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || ||||| || || || || || Sbjct 166876 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 166817 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 166816 ATGCCCTCCTTGTCCTGGATCTT 166794 >seq46 Length=702932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||| || |||||||| || || | || |||||||| || || || || | Sbjct 219608 CCTTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 219667 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||||||||| || | ||||||||||| |||||| Sbjct 219668 TCAAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT 219713 >seq30 Length=167504 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || | ||| || || |||||| || ||||| || || || || || || Sbjct 89664 AGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGG 89605 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || ||||| || |||| || ||||| || || || | ||||||| Sbjct 89604 CCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCC 89545 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 89544 TTGTCCTGGATCTT 89531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727666773432