Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq18 122 5e-23
seq46 87.8 1e-12
seq30 84.2 1e-11
>seq18
Length=186891
Score = 122 bits (134), Expect = 5e-23
Identities = 183/256 (71%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 34453 TCTGAACAAATACATATCCAATCGTCG-CCGCCTCTAAGACGCAACACCAAATGGAGAGT 34511
|| ||| ||||| || || || | | || || | ||| || | |||||| || |||||
Sbjct 167704 TCCGAAAAAATATGTACACACTCATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGT 167645
Query 34512 GCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGC 34571
|||||||||||||||||| ||||| ||||| || | || || | ||| || |||||
Sbjct 167644 GCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGC 167585
Query 34572 AAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAA 34631
|| || || ||||||||||| || || | |||||||| || |||| |||| || |
Sbjct 167584 GAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATC-TTTGACTTGA 167526
Query 34632 CGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTT 34690
| || ||||||||| ||| ||||||| || || || || || || || || |
Sbjct 167525 CATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCT 167466
Query 34691 TCACAAAAATCTGCAT 34706
| ||||| || |||||
Sbjct 167465 TGACAAATATTTGCAT 167450
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| |||||||| ||| || |||||||| || || ||||| || ||
Sbjct 167211 AGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGG 167152
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| |||||||| ||||| ||||| || | ||| ||||||||||| || | ||||||
Sbjct 167151 CCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCC 167092
Query 34609 TTGTCTGTGATCTT 34622
|||||| ||||||
Sbjct 167091 TTGTCTTGGATCTT 167078
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | ||||| || || ||| |||||| || ||||| ||||| ||
Sbjct 166936 CCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAG 166877
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || || ||||| || ||||| || || || || ||
Sbjct 166876 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 166817
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 166816 ATGCCCTCCTTGTCCTGGATCTT 166794
>seq46
Length=702932
Score = 87.8 bits (96), Expect = 1e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||| || |||||||| || || | || |||||||| || || || || |
Sbjct 219608 CCTTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 219667
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| ||||||||||| || | ||||||||||| ||||||
Sbjct 219668 TCAAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT 219713
>seq30
Length=167504
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| || || | ||| || || |||||| || ||||| || || || || || ||
Sbjct 89664 AGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGG 89605
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||| || ||||| || |||| || ||||| || || || | |||||||
Sbjct 89604 CCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCC 89545
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 89544 TTGTCCTGGATCTT 89531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727666773432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |