Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 125 6e-24 seq30 95.1 1e-14 >seq18 Length=186891 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || ||| |||| |||||| ||||||| | ||||| || | || Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| || || || || || || || ||||| || ||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| |||||||| || | || | |||||||||| Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629 Query 27168 ATTCAAAAGGAG 27179 |||||||||||| Sbjct 167630 ATTCAAAAGGAG 167641 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| |||| || || || || ||| || ||| | || || | ||||| Sbjct 167016 TGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGACAACGTCAAGT 167075 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || |||||||| || ||||| ||||| || ||||| ||| | || | || || | Sbjct 167076 CGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTA 167135 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | || ||| | ||| |||| || ||||||||||| || ||||| || | | Sbjct 167136 AGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAGTCTACTCTCC 167195 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||| | ||| | || ||||| || Sbjct 167196 ACTTGGTTCTCCGTCTCCGTGGTGGAAT 167223 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| | || || | || || ||| | || Sbjct 167222 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCA 167281 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| || || || || || ||||| || ||| Sbjct 167282 GATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 167341 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| |||||||| || | ||| | ||||| ||||| Sbjct 167342 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 167401 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | |||||||| | ||| | || ||||| || Sbjct 167402 ATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGTCTTCGTGGTGGTAT 167451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| |||| || ||||| ||||| |||||||| | || || | ||||| Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGAGC 166793 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || ||||| || || ||||| || ||||| || | || ||||| Sbjct 166794 AAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAAG 166853 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | || | || ||||||||||| || |||||||| || | || Sbjct 166854 CAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTCAC 166913 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || || || || Sbjct 166914 TTGGTCCTCCGTCTTCGTGGCGGTAT 166939 >seq30 Length=167504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | |||||| || || || ||||| || || || || || |||||| Sbjct 89507 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 89566 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | ||||||||| ||| | |||||| | ||| | || || |||||| Sbjct 89567 CAACGCCTAATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAAC 89626 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| | || || ||| | || || || Sbjct 89627 ATCCAGAAGGAGTCGACCCTTCATCTCGTCTTACGTCTACGTGGAGG 89673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915660014080