Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq18 154 3e-32
seq30 147 5e-30
seq46 105 2e-17
>seq18
Length=186891
Score = 154 bits (170), Expect = 3e-32
Identities = 168/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | ||||| |||||||| |||||||| || || || | | |||
Sbjct 167443 ACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGT 167384
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||| |||||||||||||| || || || ||||||||||| || | ||
Sbjct 167383 TCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACC 167324
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || ||||| ||||| || || || ||||||||| |
Sbjct 167323 CTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAA 167264
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||||| |||||||| || |||||||| || || | ||||||
Sbjct 167263 GGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | |||||| |||||||| || |||||||| ||||| | || ||
Sbjct 166931 ACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGT 166872
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||| || || ||||||||||| || ||||| | ||||| || || || |||| ||
Sbjct 166871 GCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCC 166812
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||| ||||| || || ||||| ||
Sbjct 166811 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACCTCAAG 166752
Query 211073 AGTGATCGTCTTTCCCGT 211090
||||| ||||| || ||
Sbjct 166751 GGTGATAGTCTTACCGGT 166734
Score = 132 bits (146), Expect = 1e-25
Identities = 152/203 (75%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||| |||||||| || ||||| || |||| |||||| | || ||
Sbjct 167205 AGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 167146
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| || ||||||||||| || || | || ||||||||
Sbjct 167145 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCT 167086
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|||||||| || ||||| |||||||| || ||| ||| |||||||| |||||
Sbjct 167085 TGGATCTTCGACTTGACGTTGTCGATGGTATC---GCTCGATTCGACCTCGAGGGTGATA 167029
Query 211080 GTCTTTCCCGTGAGAGTCTTTAC 211102
||||| || || | ||||| ||
Sbjct 167028 GTCTTGCCGGTCAAGGTCTTGAC 167006
Score = 127 bits (140), Expect = 5e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || || | ||| |||||| ||| ||||| ||||| ||||| ||
Sbjct 167674 TCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAG 167615
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||| |||| |||||||| ||||| || | || |||||||| || ||||
Sbjct 167614 TGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAAT 167555
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||| |||||||||||| || || || || || ||||| || ||||| ||
Sbjct 167554 ACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTC 167495
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
| || || ||||| ||||| | |||||| ||||| | |||||
Sbjct 167494 CAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
>seq30
Length=167504
Score = 147 bits (162), Expect = 5e-30
Identities = 132/166 (80%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||| || ||||| || ||||| || |||||||| || |||| ||
Sbjct 89671 TCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAG 89612
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || ||||| || |||||||| |||||||| ||||||||||| ||||| ||||
Sbjct 89611 GGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAAT 89552
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
||| ||||||||||||||||| ||| || || ||||| ||||||
Sbjct 89551 TCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTCA 89506
>seq46
Length=702932
Score = 105 bits (116), Expect = 2e-17
Identities = 102/131 (78%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || | ||| || | |||||| || || ||||| || ||||||||
Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729
Query 211047 ATGGTGTCAGA 211057
||||| || ||
Sbjct 219730 ATGGTATCCGA 219740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159144514775960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |