Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq18 84.2 2e-11 >seq18 Length=186891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || |||||| || || || || || | ||| || || |||| ||| Sbjct 167202 ACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCA 167143 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || ||||| || ||||| || ||||| |||||| | || ||| ||||| Sbjct 167142 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGG-ATGCCCTCCTTGTCTTG 167084 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| |||| ||| | | | ||||||||||| || || || | |||||| | | Sbjct 167083 GATCTTCGACTTGA-CGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCT 167025 Query 39254 TTCCCGTCA 39262 | || |||| Sbjct 167024 TGCCGGTCA 167016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542961516152