Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq261 132 1e-25
seq18 125 2e-23
seq46 102 2e-16
>seq261
Length=2562
Score = 132 bits (146), Expect = 1e-25
Identities = 207/290 (71%), Gaps = 7/290 (2%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGA 7498
||| |||||||||||||||| | ||||| || ||||| || ||| |||||| |
Sbjct 1429 AACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGCTTTTTCTGTTC 1487
Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTT 7557
||||||| |||||||| | || ||| |||| |||||| | |||| ||| |
Sbjct 1488 TTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATAAT---CAATTA 1543
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
||||| | || || || || || || | | ||||| |||||| | |||||||| | |
Sbjct 1544 TACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGGTTATGCCAGCT 1603
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
| ||||| || |||||||| | || | || ||| | | || | ||| ||||||||
Sbjct 1604 TTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTCCAGATATGGCA 1663
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
|| || || | ||||||||||||||||||||| |||| ||| |||||
Sbjct 1664 TTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTATT 1713
>seq18
Length=186891
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| |||||| || ||||| | ||||||||| | ||
Sbjct 167671 ACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGT 167612
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | ||||| || ||||| || | ||| |||||||| || ||||||||
Sbjct 167611 ACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACC 167552
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || ||||||||| ||| ||| || || ||||| || | || || || ||
Sbjct 167551 CTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAA 167492
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||||||||||||||| || | || | ||||||
Sbjct 167491 TGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||||||||| || ||||| || | ||||| || | | || | || ||
Sbjct 167205 AGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 167146
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| || ||||||||||| || || || || |||||||||
Sbjct 167145 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCT 167086
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || |||||||| || | ||| || || | ||||| |||
Sbjct 167085 TGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTC 167026
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| ||||| || ||
Sbjct 167025 TTGCCGGTCAAGGTCTT 167009
>seq46
Length=702932
Score = 102 bits (112), Expect = 2e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| ||||| || | | ||| | ||||| || || ||||| |||||||||||
Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||||||||||| || |||||||| |||||||| |||||||| ||| ||| |||
Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729
Query 225646 ATGGTGTCTGA 225656
||||| || ||
Sbjct 219730 ATGGTATCCGA 219740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192523499229776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |