Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq261 132 1e-25 seq18 125 2e-23 seq46 102 2e-16 >seq261 Length=2562 Score = 132 bits (146), Expect = 1e-25 Identities = 207/290 (71%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGG-TACTATATTTTCTATGA 7498 ||| |||||||||||||||| | ||||| || ||||| || ||| |||||| | Sbjct 1429 AACATTATATTTAATATTTGCTTTATTTTCAGG-ATTATTGGGTACAGCTTTTTCTGTTC 1487 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTT 7557 ||||||| |||||||| | || ||| |||| |||||| | |||| ||| | Sbjct 1488 TTATAAGACTAGAATTAAGCGGACCTGGTGTTCAATATATTGCA-GATAAT---CAATTA 1543 Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| | || || || || || || | | ||||| |||||| | |||||||| | | Sbjct 1544 TACAATGCGATCATAACTGCCCACGCAATATTAATGATATTCTTTATGGTTATGCCAGCT 1603 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | ||||| || |||||||| | || | || ||| | | || | ||| |||||||| Sbjct 1604 TTAATAGGTGGATTCGGAAACTTTTTATTACCATTACTAGTAGGGGGTCCAGATATGGCA 1663 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || || | ||||||||||||||||||||| |||| ||| ||||| Sbjct 1664 TTCCCTAGATTAAACAATATAAGTTTTTGATTATTACCACCTAGTTTATT 1713 >seq18 Length=186891 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||| || ||||| | ||||||||| | || Sbjct 167671 ACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGT 167612 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||||| || ||||| || | ||| |||||||| || |||||||| Sbjct 167611 ACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACC 167552 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||||||| ||| ||| || || ||||| || | || || || || Sbjct 167551 CTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAA 167492 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||||||||| || | || | |||||| Sbjct 167491 TGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| || ||||| || | ||||| || | | || | || || Sbjct 167205 AGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 167146 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||| || ||||||||||| || || || || ||||||||| Sbjct 167145 TCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCT 167086 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || | ||| || || | ||||| ||| Sbjct 167085 TGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTC 167026 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || Sbjct 167025 TTGCCGGTCAAGGTCTT 167009 >seq46 Length=702932 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | ||| | ||||| || || ||||| ||||||||||| Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || |||||||| |||||||| |||||||| ||| ||| ||| Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729 Query 225646 ATGGTGTCTGA 225656 ||||| || || Sbjct 219730 ATGGTATCCGA 219740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523499229776