Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq104 284 2e-71 >seq104 Length=83277 Score = 284 bits (314), Expect = 2e-71 Identities = 1036/1599 (65%), Gaps = 57/1599 (4%) Strand=Plus/Plus Query 76812 GTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTT 76871 ||||| ||||||||||| ||||| || |||||||| |||| || ||||||||| || Sbjct 46776 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTG 46835 Query 76872 GTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATG 76931 || | || | || || || || || ||||| || ||| |||||| ||| Sbjct 46836 GTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 46895 Query 76932 AAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTT 76991 || || || | || || ||||| | | ||||| ||| | || ||||||| || Sbjct 46896 AATGCACCACGGTCGGCAGCCATCTGGACGATGGTACGTTGTGAGATCTCCCAAACGGTC 46955 Query 76992 TTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCT 77048 ||| ||| ||||||||| |||||| |||| | ||||| || || ||||| || Sbjct 46956 TTGTAAAGAGCCTTGATATCAGCTGGAATATTTGGAACATTTTGGATTGATCCACCGTCA 47015 Query 77049 GATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGG 77108 | || || ||||| || | ||| ||| | | | | || | | | |||| Sbjct 47016 GCAATGATACGGTTCTTCATGTTATCGGACCAGAGTCCCATATCAACAAGATCCTTAAGA 47075 Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || || || | || || ||||||| | || | |||| || || || | Sbjct 47076 AGCCATGGGTTGACAACCTGGAACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAG 47135 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 |||||||| || | | || ||| || | ||| ||| ||| |||||||||||| Sbjct 47136 GTATATGGCTCGAAGCACTCGTTGAAACCAAGAATCTGACTGGTACTGGCAGTTGGCATA 47195 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTAT-CTTTTAGATAT 77285 || || || | ||||| || | || || ||||| | || | | ||| || || Sbjct 47196 GGAGCGACGAGCAAACTGTTGCGGATGCC--GTGTTGAGCAATCTGTTGCTTCAAGCTAG 47253 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTA 77345 ||||||||||||||| | |||| |||| |||| | || ||||| || || || Sbjct 47254 C-CCAATCCCAAAGATCGGTAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTG 47312 Query 77346 CTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC-AC--AA 77402 ||| ||| || | ||||| ||||| || || | ||| || | || || || Sbjct 47313 GAGGCAGGTGAGCCTTGGTATGTCTCATATGGACCATGAATTTTTGCCAACTCCACGGAA 47372 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGC 77461 || ||| || ||| ||||| |||||||| || | | || || | |||| || Sbjct 47373 ---GCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTAAGGTGCTTG-GC 47428 Query 77462 TTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCC 77521 ||| | || || ||| | | | | |||||||| || | || ||||| || Sbjct 47429 TTCTGGAGACTCGAAAGGAAGGCGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACC 47488 Query 77522 AATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATT 77581 | | |||||||||| || | |||| || | || || |||| || ||||| || Sbjct 47489 GAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGCCTCAGGAACTGGGTAATAGTT 47548 Query 77582 AATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAG 77641 | || ||||| ||||| | || | || ||||||| || || | || || | Sbjct 47549 GACATCGATAATCTTATTCAAGTTCTTGACGACTACTTGGCAGACCTCGTGGAGCTTTTG 47608 Query 77642 AAAATCAAA--------TCTTCCATCTATAACAAACATGTTC--AAAGCTATAGATGCTA 77691 || ||| | ||||| || |||| | |||| | ||| | ||||| | Sbjct 47609 GAAGTCATAAGTGGCAGTCTTC--TCGTCAACATA--TGTTGGGAGAGCAAGCGATGCCA 47664 Query 77692 GATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACATAGATTA 77750 ||| ||||| || ||||||| | || || || | | ||||| || || | || Sbjct 47665 AATTGCAAACAGCGACCTCATCTG-GTGCACAGTACTCGACAATCTCAGTGCACAAGTTG 47723 Query 77751 CTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAA 77810 | | ||| || || ||||| | |||||| |||||| ||||| | ||||| ||| Sbjct 47724 GAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAA 47783 Query 77811 AGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 77870 || || || || | ||||| ||| |||| | || | ||||| | ||| | | Sbjct 47784 AGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGG 47843 Query 77871 GCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCA------TATTGAGTATATA--GCC 77922 ||||| || | ||| || | || | |||| |||| ||| | ||| Sbjct 47844 GCTTTGATGCTC---TTG---CGACCCTTGCCTTCAGACTCGTATTTCTCATACAAAGCC 47897 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 || || || || || | || || |||||||||| || || || ||||||||||||| Sbjct 47898 --TCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACATCAATG 47955 Query 77983 ACCAGTCACCATCTTCCTT--AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||||||| | ||| || ||| || ||||| |||||||| || ||||| ||||| Sbjct 47956 TCCAGTCA--AGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTA 48013 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 || ||||| |||| | | || || ||||| |||||| ||||| || ||||| Sbjct 48014 GAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTC 48073 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | || ||| | |||||||| || || || || || | | | ||||| || || ||||| Sbjct 48074 GAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACC 48133 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 || ||||| | |||||| |||||||| || |||||| | ||| |||| ||| ||||| Sbjct 48134 ACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTT 48193 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA--ATGGAT 78278 || |||| ||||| || | ||||||| || | || || || | | || || Sbjct 48194 GGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTGAG 48253 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || |||| || || | || ||| ||||||||| ||||||||| Sbjct 48254 A--CCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATA 48311 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 || || || ||||| ||| |||||| | ||| || ||| Sbjct 48312 CCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 48350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664423586560