Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq104 313 4e-80 >seq104 Length=83277 Score = 313 bits (346), Expect = 4e-80 Identities = 1328/2068 (64%), Gaps = 46/2068 (2%) Strand=Plus/Plus Query 75373 CAACG-TGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 ||||| ||||||| || || | || || | | ||||| ||||||||||| ||||| | Sbjct 46741 CAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCT 46800 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | |||||||| |||| || ||||||||| || || | || | || || Sbjct 46801 TGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCT 46860 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 || || || ||||| || ||| |||||| ||||| || || | || || ||||| | Sbjct 46861 TCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCT 46920 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 | ||||| ||| | || ||||||| || ||| ||| ||||||||| ||| Sbjct 46921 GGACGATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTG 46980 Query 75612 GAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 ||| ||||| | ||||| || ||||| || |||| || || ||||| || | || Sbjct 46981 GAATATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTAT 47040 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 | ||| | | | || | | | |||| || || || |||| || || | Sbjct 47041 CGGACCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACT 47100 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 |||||| | || | ||||| || || || ||||||||| || | | || ||| Sbjct 47101 CTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGA 47160 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 || | ||| ||| || ||||| |||||||| || || | ||||| || | || Sbjct 47161 AACCAAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGA 47220 Query 75849 GACCATGTGTTCTG--ATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCTGATGGTA 75905 || ||||| | || | | ||| || || ||||||||||||||| | ||| Sbjct 47221 TGCC--GTGTTGAGCAATCTGTTGCTTCAAGCTAGC-CCAATCCCAAAGATCGGTAGGTG 47277 Query 75906 CAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTT 75965 |||| |||| | || ||||| || || ||| ||| ||| || | ||||| | Sbjct 47278 TAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCT 47337 Query 75966 CGTAAGTCCCGTCCTTTTCAGCTAGTTC---GCAACTCGCCTCTAACGCACCGTAATAAA 76022 | || | || | ||| || | || | || | | || ||| ||| |||| Sbjct 47338 CATATGGACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAA 47394 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 | |||||||| || | | ||||| | |||| ||||| || || |||||| | Sbjct 47395 TGGTTTCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGAAGGCGA 47453 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | | | || ||||| || || || ||||| || | | |||||||||| || | | Sbjct 47454 AGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAA 47513 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 ||| || || || |||| |||||||| || | ||| ||||| ||||| | || Sbjct 47514 TTGCTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTC 47573 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA-TCTA-TCA 76259 |||| ||||||| || || | || || | || ||| | | || ||| || Sbjct 47574 TTGACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCG 47633 Query 76260 CAAACATATTA----AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 ||||||| ||||| | ||||| | ||| ||||| || ||||||| | | Sbjct 47634 TCAACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGC 47692 Query 76316 GCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTG 76374 || || | | ||||| ||||| | || | ||| || || ||||| | ||| Sbjct 47693 ACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTG 47752 Query 76375 GTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTG 76434 ||| |||||| ||| || | ||||| ||||| | || || |||| || ||| |||| Sbjct 47753 GTTACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTG 47812 Query 76435 TGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTC 76494 | || | ||||| | ||| | | ||||| || | ||| | ||| | Sbjct 47813 AGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCC 47869 Query 76495 TCTT---TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 | || |||| ||| || || || || || || | || || |||| || Sbjct 47870 TTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCC 47929 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT--AACCCGTTTCATA 76609 |||||| || || || |||||||||| ||| ||| | ||| || ||| || ||||| Sbjct 47930 AGGACACTCGTTGGGGCACATCAATGTCCAGTCA--AGGTTCTTTTCAACACGCTTCATG 47987 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 |||||||| || ||||| ||||| || ||||| |||| | | || || ||||| Sbjct 47988 AAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 48047 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||| ||||| |||||||| | || ||| | |||||||| || || || || Sbjct 48048 TGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATG 48107 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||| || || || ||||| || ||||| | |||||| || ||||| || || Sbjct 48108 GCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAA 48167 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 |||| | ||| |||| ||| ||||| || | || ||||| || | ||||||| || Sbjct 48168 ACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCC 48227 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||||| || | || | || || || || || || | || || || | ||| Sbjct 48228 GTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCA 48287 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || |||||||||||| ||||| || || || || || ||| |||||| | ||| || Sbjct 48288 CAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAG 48347 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||| || | ||| || || || || || | ||| || || || || ||| Sbjct 48348 CAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTG 48407 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 || |||| || | | ||||| || || || | || || |||||| || Sbjct 48408 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG-TCTTATTATTTAT 77148 ||||| ||||| || ||||| | |||||| || || ||||| |||| |||| || | Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTC-ACAGATCTTGCCATCGAG 48526 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 77206 | | |||||| || | || || ||||| || || | ||| ||||| || Sbjct 48527 GCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCA 48584 Query 77207 CTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATC-CATGAC 77265 | ||||| | |||| | || || || | | ||| || || ||||| ||| ||| Sbjct 48585 CGGTCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT 48644 Query 77266 AGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTC 77325 || | || || || || | | ||| |||| || ||||||| |||| || Sbjct 48645 TGT-TTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTC 48703 Query 77326 TTCCATTACG-TCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTC 77384 || ||| ||| ||| | || || |||| |||||| |||||||| || || |||| Sbjct 48704 GGAGATGACGCTCG-AGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTC 48762 Query 77385 TAGCAGCTAGAATTGCATAGTCAGGATG 77412 | || || || || ||||| || || || Sbjct 48763 TTGCTGCGAGGATGGCATAATCGGGGTG 48790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929908513280