Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 179 8e-40 seq46 141 2e-28 seq30 107 4e-18 seq192 96.9 7e-15 seq476 95.1 3e-14 >seq18 Length=186891 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| |||||||| |||| || | ||||| || ||||| |||||||| || Sbjct 167676 CCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 167617 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| | ||| || ||||| || ||||| || |||||||| ||| Sbjct 167616 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGA 167557 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||||| || || |||| || |||||||||| || ||| Sbjct 167556 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACT 167497 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| |||||||||||||| || ||||| ||||| Sbjct 167496 TCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || ||||| || ||||||||||| | | Sbjct 167220 CCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAA 167161 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| ||||| || || |||||||| | |||||||||||| || Sbjct 167160 AGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGG 167101 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| | || ||| | ||||| || || | |||||| Sbjct 167100 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACC 167041 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||| ||||| ||||| || ||||| ||||| |||| Sbjct 167040 TCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004 Score = 159 bits (176), Expect = 7e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || ||||| |||| ||| | ||| || |||||||| |||||||| | Sbjct 167449 ACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGA 167390 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || ||||||||||| | ||| || || || || || | || ||||||||| | Sbjct 167389 CAAG-GTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 167331 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | ||||||||||| || || ||||| | |||||| | |||||||| || |||| ||| | Sbjct 167330 GGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAA 167271 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 | || | ||||| ||||| || || | |||||| ||||| || |||||| Sbjct 167270 CCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221 Score = 147 bits (162), Expect = 5e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || |||| || | |||| || || ||||||||||| |||| Sbjct 166937 ACCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGA 166878 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || || ||||||||||||||||| || || || Sbjct 166877 GAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 166818 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| ||||||||||| |||||||| ||| || ||| | ||||||||||| || | || | Sbjct 166817 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCGGACGACTCCA 166759 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | || || ||||| |||||||| || Sbjct 166758 CCTCAAGGGTGATAGTCTTACCGGT 166734 >seq46 Length=702932 Score = 141 bits (156), Expect = 2e-28 Identities = 110/131 (84%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||| ||||| |||||||| ||||| || || || |||||| Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 |||||||||||||| ||||||||||||||||| |||||||| | ||||| ||||| Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729 Query 283032 ATAGTGTCCGA 283042 || || ||||| Sbjct 219730 ATGGTATCCGA 219740 >seq30 Length=167504 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || | || ||||| | || || || |||||||||||||| | Sbjct 89673 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 89614 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || || ||||| || ||||| ||||| | |||||||| ||| ||| Sbjct 89613 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 89554 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || ||||||||||| |||||||| | ||| || | ||||| ||||| Sbjct 89553 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTC 89507 >seq192 Length=9579 Score = 96.9 bits (106), Expect = 7e-15 Identities = 185/258 (72%), Gaps = 21/258 (8%) Strand=Plus/Minus Query 109921 GCTAGTAATCTTTAGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATA 109980 |||||| ||||| | | || |||||||||||||||||| || ||||||||| | || Sbjct 7616 GCTAGTGATCTTAGGGTCGCGACATCATCAAATTGCGGGGACTCCCTAAAGCTTTCACTA 7557 Query 109981 CCAAGGTTGATTGTGAAAGC-ATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAA 110037 | || | || | | |||||| ||| |||||| | ||| || || |||||| |||| | Sbjct 7556 CTAA-GCTGTTGGCGAAAGCTGGCAG-TGGCCGGGGTAAC-GACCTTGGGTATAGTAAGA 7500 Query 110038 ATTCATATGATGCCACAATGGGCAATCCGCAGCCAAGCCTCTAAAGGAAAATTATTCCCA 110097 | | ||| |||||||| ||||||||||||| ||||| | ||| || Sbjct 7499 ACGTGAAAGAT-ATACAATGGGTAATCCGCAGCCAA-CCTCT------ACGCTATAAGCA 7448 Query 110098 TGAGGAAGGTTCAACGACTAAACGGTGATGGGTCTG-GTGCTTAGC--ACAGGCTTAAGA 110154 ||| |||||||||||||||||||| |||| ||| || || |||| | ||||| Sbjct 7447 GGAGTGTGGTTCAACGACTAAACGGTGGTGGG-CTGTAGGCAGGGCCTACAGTC-TAAGA 7390 Query 110155 TATAGTCTAGTCCCTGAG 110172 |||||||| ||||| || Sbjct 7389 TATAGTCT--TCCCTAAG 7374 >seq476 Length=308794 Score = 95.1 bits (104), Expect = 3e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223 || |||| || | |||| | ||| | |||||| | ||| ||| ||||||| || Sbjct 12321 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTC 12262 Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283 || | |||||||| || | | ||| |||||| || || ||||| || |||||| | Sbjct 12261 TTCTGGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCC 12202 Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343 || | | || || | ||||| || || || ||||| |||| ||||||||| Sbjct 12201 TCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGA 12142 Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403 ||| || || || || |||||||||||||| |||||||| ||||| |||| | Sbjct 12141 ACATCTCTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 12082 Query 230404 CCGGTGT 230410 | ||||| Sbjct 12081 CTGGTGT 12075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732440681616