Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq18 179 8e-40
seq46 141 2e-28
seq30 107 4e-18
seq192 96.9 7e-15
seq476 95.1 3e-14
>seq18
Length=186891
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| |||||||| |||| || | ||||| || ||||| |||||||| ||
Sbjct 167676 CCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 167617
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| | ||| || ||||| || ||||| || |||||||| |||
Sbjct 167616 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGA 167557
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || |||||||||| || || |||| || |||||||||| || |||
Sbjct 167556 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACT 167497
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| |||||||||||||| || ||||| |||||
Sbjct 167496 TCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 161 bits (178), Expect = 2e-34
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| || | || ||||| || ||||||||||| | |
Sbjct 167220 CCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAA 167161
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| ||||| || || |||||||| | |||||||||||| ||
Sbjct 167160 AGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGG 167101
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| | || ||| | ||||| || || | ||||||
Sbjct 167100 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACC 167041
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||||| ||||| ||||| || ||||| ||||| ||||
Sbjct 167040 TCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004
Score = 159 bits (176), Expect = 7e-34
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||||||||| || ||||| |||| ||| | ||| || |||||||| |||||||| |
Sbjct 167449 ACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGA 167390
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || ||||||||||| | ||| || || || || || | || ||||||||| |
Sbjct 167389 CAAG-GTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 167331
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
| ||||||||||| || || ||||| | |||||| | |||||||| || |||| ||| |
Sbjct 167330 GGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAA 167271
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
| || | ||||| ||||| || || | |||||| ||||| || ||||||
Sbjct 167270 CCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221
Score = 147 bits (162), Expect = 5e-30
Identities = 157/205 (77%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || |||| || | |||| || || ||||||||||| ||||
Sbjct 166937 ACCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGA 166878
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || ||||||||||||||||| || || ||
Sbjct 166877 GAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 166818
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| |||||||| ||| || ||| | ||||||||||| || | || |
Sbjct 166817 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCGGACGACTCCA 166759
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| || || ||||| |||||||| ||
Sbjct 166758 CCTCAAGGGTGATAGTCTTACCGGT 166734
>seq46
Length=702932
Score = 141 bits (156), Expect = 2e-28
Identities = 110/131 (84%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||||||||||||||| | ||| ||||| |||||||| ||||| || || || ||||||
Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|||||||||||||| ||||||||||||||||| |||||||| | ||||| |||||
Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729
Query 283032 ATAGTGTCCGA 283042
|| || |||||
Sbjct 219730 ATGGTATCCGA 219740
>seq30
Length=167504
Score = 107 bits (118), Expect = 4e-18
Identities = 124/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || | || ||||| | || || || |||||||||||||| |
Sbjct 89673 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 89614
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || ||||| || ||||| ||||| | |||||||| ||| |||
Sbjct 89613 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 89554
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039
|| ||||||||||| |||||||| | ||| || | ||||| |||||
Sbjct 89553 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTC 89507
>seq192
Length=9579
Score = 96.9 bits (106), Expect = 7e-15
Identities = 185/258 (72%), Gaps = 21/258 (8%)
Strand=Plus/Minus
Query 109921 GCTAGTAATCTTTAGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATA 109980
|||||| ||||| | | || |||||||||||||||||| || ||||||||| | ||
Sbjct 7616 GCTAGTGATCTTAGGGTCGCGACATCATCAAATTGCGGGGACTCCCTAAAGCTTTCACTA 7557
Query 109981 CCAAGGTTGATTGTGAAAGC-ATCAGCTGGCCGAG--AACAGAACTCGGGTATGGTAAAA 110037
| || | || | | |||||| ||| |||||| | ||| || || |||||| |||| |
Sbjct 7556 CTAA-GCTGTTGGCGAAAGCTGGCAG-TGGCCGGGGTAAC-GACCTTGGGTATAGTAAGA 7500
Query 110038 ATTCATATGATGCCACAATGGGCAATCCGCAGCCAAGCCTCTAAAGGAAAATTATTCCCA 110097
| | ||| |||||||| ||||||||||||| ||||| | ||| ||
Sbjct 7499 ACGTGAAAGAT-ATACAATGGGTAATCCGCAGCCAA-CCTCT------ACGCTATAAGCA 7448
Query 110098 TGAGGAAGGTTCAACGACTAAACGGTGATGGGTCTG-GTGCTTAGC--ACAGGCTTAAGA 110154
||| |||||||||||||||||||| |||| ||| || || |||| | |||||
Sbjct 7447 GGAGTGTGGTTCAACGACTAAACGGTGGTGGG-CTGTAGGCAGGGCCTACAGTC-TAAGA 7390
Query 110155 TATAGTCTAGTCCCTGAG 110172
|||||||| ||||| ||
Sbjct 7389 TATAGTCT--TCCCTAAG 7374
>seq476
Length=308794
Score = 95.1 bits (104), Expect = 3e-14
Identities = 169/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223
|| |||| || | |||| | ||| | |||||| | ||| ||| ||||||| ||
Sbjct 12321 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTC 12262
Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283
|| | |||||||| || | | ||| |||||| || || ||||| || |||||| |
Sbjct 12261 TTCTGGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCC 12202
Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343
|| | | || || | ||||| || || || ||||| |||| |||||||||
Sbjct 12201 TCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGA 12142
Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403
||| || || || || |||||||||||||| |||||||| ||||| |||| |
Sbjct 12141 ACATCTCTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 12082
Query 230404 CCGGTGT 230410
| |||||
Sbjct 12081 CTGGTGT 12075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046732440681616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |