Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 122 6e-23 >seq18 Length=186891 Score = 122 bits (134), Expect = 6e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||||||| |||||| |||||||||||||| | ||| ||| |||| || Sbjct 166918 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCG 166859 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||||||| |||||||||| || | || ||||| ||| Sbjct 166858 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 166799 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||||| || |||||||| | || || ||||| Sbjct 166798 ATCTTGCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTA 166739 Query 44309 CCCGT 44313 || || Sbjct 166738 CCGGT 166734 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || |||||||||||||| |||||||||||| |||| || | || || Sbjct 167659 CACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTC 167600 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || ||||| ||||| || |||| || | ||| ||||| ||| Sbjct 167599 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 167540 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || || |||| ||||| ||||| Sbjct 167539 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 167480 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| || || |||||||| Sbjct 167479 GCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| ||| |||||||||||| ||||| |||| | || | || | || || Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGC-CATCCTC 167372 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || || | ||||| || || | || | ||| ||||| ||| Sbjct 167371 CAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTG 167312 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| | | | || || || | ||||| ||||||| || || ||||| Sbjct 167311 AATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTT 167252 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||||||||| Sbjct 167251 TCCAGTAAGAGTCTTGACGAAGATTTGCAT 167222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988188758968