Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq18 127 5e-24
seq30 104 6e-17
>seq18
Length=186891
Score = 127 bits (140), Expect = 5e-24
Identities = 151/202 (75%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| || ||||| || |||||| | ||||| ||| |||||
Sbjct 167225 CAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCAGAT 167284
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||||||||| || || || ||||| || ||||| ||
Sbjct 167285 ACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAACAG 167344
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||||| || ||||| || || || | || ||||| | || |||| |||| || || |
Sbjct 167345 CGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAAC-CTTGTCCGACTACAATAT 167403
Query 178103 CCAAAAAGAATCAACACTGCAT 178124
|||||| || || ||||| |||
Sbjct 167404 CCAAAAGGAGTCCACACTTCAT 167425
Score = 109 bits (120), Expect = 1e-18
Identities = 148/204 (73%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCA 177987
|||| || || | || || || || |||||||||||||| ||| ||| || ||||
Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGC---GATACCA 167060
Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047
|||| |||||||| ||||| || ||||| || || ||||| |||||||| ||||| |
Sbjct 167061 TCGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTC 167120
Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107
| ||||| || || || || || || || || | || ||| | || || ||| | || |
Sbjct 167121 TCATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGA 167180
Query 178108 AAGAATCAACACTGCATCTTGTTT 178131
|||| || || || || |||| ||
Sbjct 167181 AAGAGTCTACTCTCCA-CTTGGTT 167203
>seq30
Length=167504
Score = 104 bits (114), Expect = 6e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| ||||| || |||||| ||||| |||||||| || ||||| || || || ||
Sbjct 89507 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 89566
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
||||| || ||||||||||| || || |||||||| || | || || | || || |||
Sbjct 89567 CAACGCCTAATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAAC 89626
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132
|||| || || || || || ||||| || ||
Sbjct 89627 ATCCAGAAGGAGTCGACCCTTCATCTCGTCTT 89658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203723426905776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |