Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 127 5e-24 seq30 104 6e-17 >seq18 Length=186891 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || |||||| | ||||| ||| ||||| Sbjct 167225 CAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCAGAT 167284 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||| || ||||| || Sbjct 167285 ACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAACAG 167344 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| || ||||| || || || | || ||||| | || |||| |||| || || | Sbjct 167345 CGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAAC-CTTGTCCGACTACAATAT 167403 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||| || || ||||| ||| Sbjct 167404 CCAAAAGGAGTCCACACTTCAT 167425 Score = 109 bits (120), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCA 177987 |||| || || | || || || || |||||||||||||| ||| ||| || |||| Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGC---GATACCA 167060 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 |||| |||||||| ||||| || ||||| || || ||||| |||||||| ||||| | Sbjct 167061 TCGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTC 167120 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 | ||||| || || || || || || || || | || ||| | || || ||| | || | Sbjct 167121 TCATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGA 167180 Query 178108 AAGAATCAACACTGCATCTTGTTT 178131 |||| || || || || |||| || Sbjct 167181 AAGAGTCTACTCTCCA-CTTGGTT 167203 >seq30 Length=167504 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| || |||||| ||||| |||||||| || ||||| || || || || Sbjct 89507 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAA 89566 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || ||||||||||| || || |||||||| || | || || | || || ||| Sbjct 89567 CAACGCCTAATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAAC 89626 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||| || || || || || ||||| || || Sbjct 89627 ATCCAGAAGGAGTCGACCCTTCATCTCGTCTT 89658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723426905776