Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 seq18 127 2e-24 >seq30 Length=167504 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||||||||| || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 89673 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 89614 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| |||||||||||||| || ||||| ||||| || | |||| Sbjct 89613 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 89554 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 89553 ATTCCCTCCTTGTCCTGGATCTT 89531 >seq18 Length=186891 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || |||||| ||||||||| ||||| || || ||| Sbjct 166936 CCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAG 166877 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| || || |||| || || || || | |||| Sbjct 166876 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 166817 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||||| ||||||||| Sbjct 166816 ATGCCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATAGTGTCGGACGACTCCAC 166758 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 166757 CTCAAGGGTGATAGTCTTACCGGT 166734 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| ||||||||||| |||||||| || ||| | Sbjct 167676 CCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 167617 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| |||| ||||||||||| | ||| Sbjct 167616 AGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGA 167557 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| ||| ||| | | | | | ||||| ||||| || Sbjct 167556 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATTGTGTCCGAAGACTCAAC 167498 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||||| ||||| || || || ||||| Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||| ||||||||||| ||||| || Sbjct 167220 CCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAA 167161 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||| || || || || || || |||||||||| || Sbjct 167160 AGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGG 167101 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| ||| | | | || |||||||| || || Sbjct 167100 ATGCCCTCCTTGTCTTGGATCTTCGACTT-GACGTTGTCGATGGTATCGCTCGATTCGAC 167042 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || |||| ||||| |||| Sbjct 167041 CTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || ||| |||||| || || || |||||||| Sbjct 167448 CCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGAC 167389 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | |||||||| ||||| || || ||||||||||| | || Sbjct 167388 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 167329 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || | | ||| | | | ||| || || || || Sbjct 167328 ATACCCTCCTTATCC-TGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAAC 167270 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| || ||||| Sbjct 167269 CTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 167222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301087484800