Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq908 96.9 7e-15 seq1472 84.2 5e-11 >seq908 Length=77775 Score = 96.9 bits (106), Expect = 7e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446 |||| || || || ||||| | || | |||||| | ||| ||| |||| ||| | Sbjct 45353 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCAC 45412 Query 230447 TTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 230506 || | ||||||||||| | || ||| || ||||| || ||||| || || || | Sbjct 45413 TTCTCGGCATGAACGCCAACCTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCC 45472 Query 230507 TTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGC 230566 | || | || || | ||||| || ||||| | ||||| || | ||||||||| Sbjct 45473 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGA 45532 Query 230567 TCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGC 230626 ||| || ||| || ||||||||||||||||| |||||||| ||| || || | | Sbjct 45533 ACATCTCCCTTGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 45592 Query 230627 CTGGTGTGATG 230637 | || || ||| Sbjct 45593 CCGGCGTCATG 45603 >seq1472 Length=199535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 282462 AAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATC 282521 || || || | |||||| || ||| |||| || |||| |||| |||||||||| Sbjct 181068 AAATTGATCAGAAGACCTTTGATATGACTTCCATCGTGATCCTGATCGGCCATGATCATC 181127 Query 282522 ACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTT-TACCGGTTTGAAGGCCCAA 282580 | ||| ||||| | ||| | ||||| ||||| |||| | |||| || ||| | Sbjct 181128 AGATGCCCGTAACGAAGACCATTCGTGTCGTTGTATACTTGTTTGTGTTTCAA-GCCAAG 181186 Query 282581 AATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTG--CCACAGATGCATC 282637 || |||||||| | | | |||||| | ||||| ||||| ||| | | | |||||| Sbjct 181187 AAATTGTTTGATGTTCTG-GATTTCGGCATTCTTCGTGAT--TTGATCGATACTTGCATC 181243 Query 282638 GCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677 |||||||| ||||| ||||| || || || || |||||| Sbjct 181244 TCGAACGTTGAGCAATTTACCTCGAAGCGGGAATACACCA 181283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057800769523820