Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq908 87.8 2e-12 >seq908 Length=77775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/295 (67%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || || ||||| ||||||||||| ||| ||| | || ||||| ||||||||||| Sbjct 44982 TCCATGATATAGGTATCGATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 44923 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 || || |||||||| ||| ||||||| || | ||||| ||||| | ||| || || Sbjct 44922 ATTTGGAATCCGTAGAAGAATCGGGCCTCGGGGATTTGGACTTCACTGCTGAAGCGCTCG 44863 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 || || ||||| || || ||||| || ||||| || || | | || ||| Sbjct 44862 AGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATG 44803 Query 17408 AAATATTTTTCGTC--CGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462 || || ||||| || || || | |||||| | | ||| ||||||| || Sbjct 44802 AAGTAACGCTCGTCATCGTTG--AGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATAGAT 44745 Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | | ||||||| ||||| || ||| | ||||| || ||||| | ||| || Sbjct 44744 CAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCCAGAT 44690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534511585520