Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq908 87.8 2e-12
>seq908
Length=77775
Score = 87.8 bits (96), Expect = 2e-12
Identities = 198/295 (67%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287
|| || ||||| ||||||||||| ||| ||| | || ||||| |||||||||||
Sbjct 44982 TCCATGATATAGGTATCGATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 44923
Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347
|| || |||||||| ||| ||||||| || | ||||| ||||| | ||| || ||
Sbjct 44922 ATTTGGAATCCGTAGAAGAATCGGGCCTCGGGGATTTGGACTTCACTGCTGAAGCGCTCG 44863
Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407
|| || ||||| || || ||||| || ||||| || || | | || |||
Sbjct 44862 AGGAGGTTCTCGTTGACAATCCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATG 44803
Query 17408 AAATATTTTTCGTC--CGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462
|| || ||||| || || || | |||||| | | ||| ||||||| ||
Sbjct 44802 AAGTAACGCTCGTCATCGTTG--AGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATAGAT 44745
Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
| | ||||||| ||||| || ||| | ||||| || ||||| | ||| ||
Sbjct 44744 CAATCTCTTCGGCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACATTTGCCAGAT 44690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517534511585520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |