Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1406 113 4e-20 >seq1406 Length=252419 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| || |||||||| || || ||||||| Sbjct 215104 CCACCACGGAGTCGGAGAACCAAGTGTAGAGTAGATTCCTTTTGGATATTGTAGTCCGAA 215045 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| || || || || ||| | ||||||||||| ||||| || Sbjct 215044 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCAGCAAAGATAAGTCTCTGTTGGTCAGGTGGG 214985 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| |||||| || ||| Sbjct 214984 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCCGAGGACTCAACC 214925 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 || | ||| |||||||||||||| || || ||||||| Sbjct 214924 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 214888 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | |||||||||||||| ||||| ||||| | || |||| || | ||| Sbjct 215317 AGGACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCGGCCATCC 215258 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || ||||| || |||| |||| ||| ||||| || | || ||||| || Sbjct 215257 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 215198 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | | ||| |||||| | ||| || | || || ||| Sbjct 215197 TGAATCTTCGACTTCACATTGTCGATAGTATCTGAAGACTCAACCTCGAGAGTGATCGTC 215138 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || ||||| ||||||||||| Sbjct 215137 TTTCCGGTGAGGGTCTTGACGAATATTTGCAT 215106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422250379269224