Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq908 149 6e-31 seq861 122 9e-23 seq1406 98.7 1e-15 >seq908 Length=77775 Score = 149 bits (164), Expect = 6e-31 Identities = 269/388 (69%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| | || ||||||| || ||||| | || |||||| | || ||| || || Sbjct 45079 CCCTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCCACC 45138 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | | || || || |||||||| || || ||||| ||||||| || |||| Sbjct 45139 TTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTC 45198 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| |||| || ||| | |||||||| ||||||||| | || || || ||| ||||||| Sbjct 45199 GCCTCCATCTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 45258 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 || |||||| | || |||||||| || |||||| || || | || ||| |||||| Sbjct 45259 CTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCATTTG 45318 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| ||| ||| || || ||||||| || || | || ||| Sbjct 45319 AAGCATCGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 45378 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC-GA 117326 || ||| | || || || || || |||| || || || | || || || | || Sbjct 45379 CAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCA-CTTCTCGGCATGAAC-GCCAACCTGA 45436 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGA 117354 || ||||||||| ||||||||||| || Sbjct 45437 TGAAGCAATACATTGAGTTCGTCGCTGA 45464 Score = 140 bits (154), Expect = 3e-28 Identities = 206/286 (72%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| || || |||||||| | ||| ||| | || || Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | ||||| ||||||| | |||||| Sbjct 44750 TCCAAGGATCTCCA-CGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCTC 44808 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| ||| ||||| || ||||||||||| || ||||||| Sbjct 44809 CCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGCG 44868 Query 116812 TTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| ||| || || || | ||||||| || | ||||||||| || || ||| | Sbjct 44869 CTTC-AGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||||| | ||||| || | || || ||||||||| || || Sbjct 44928 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTA 44973 >seq861 Length=344942 Score = 122 bits (134), Expect = 9e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAG 40770 |||||||||| || |||||| |||| |||||| | | |||| | || || | |||| Sbjct 25376 TCACGGGCAAGACTATCACCCTCGAGGTCGAATCGAGTGACACGATTGATAATG-TCAAA 25434 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| || ||| | || || ||||| || |||| ||| ||| Sbjct 25435 TCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGC 25494 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || |||| ||||||||| ||||||||||||||||||||| | || || Sbjct 25495 AAACAACTCGAAGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCAACCCTT 25554 Query 40891 CATCTAGTGTTGCG 40904 ||||| || || || Sbjct 25555 CATCTCGTCTTACG 25568 >seq1406 Length=252419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| || || || ||||| |||| || || | | Sbjct 215106 ATGCAAATATTCGTCAAGACCCTCACCGGAAAGACGATCACTCTCGAGGTTGAGTCTTCA 215165 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || |||| || || ||||| ||||| | ||||| Sbjct 215166 GATACTATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 215225 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| ||||| || |||| || | || ||| | |||||||||| Sbjct 215226 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAC 215285 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| |||||| |||| || ||| Sbjct 215286 ATCCAAAAGGAGTCCACACTTCAT 215309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || || |||||| | || || || | |||||| | | | |||| ||||| Sbjct 214617 TCACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACCATCGATAACG-TCAAG 214675 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| || ||| | || |||||||| | |||| || || Sbjct 214676 TCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGA 214735 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || || || || |||||||||||||||||| |||| || Sbjct 214736 AAGCAGCTCGAGGACGGACGTACTCTATCTGATTACAACATCCAGAAGGAGTCCACCCTC 214795 Query 40891 CATCTAGT 40898 || || || Sbjct 214796 CACCTGGT 214803 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| || || || | || | | | |||| ||||| Sbjct 214902 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGATACTATCGACAACG-TCAAGTC 214960 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||||||||| | ||||| || |||| |||| || || || Sbjct 214961 GAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAGAGACTTATCTTTGCTGGGAA 215020 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || |||| |||||||| |||||||| ||||| ||||| Sbjct 215021 GCAACTTGAGGACGGCCGCACCCTTTCGGACTACAATATCCAAAAGGA 215068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208161428640