Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1406 89.7 6e-13 >seq1406 Length=252419 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||||||||| | | || | |||||| ||||| |||||||||||||| || || |||| Sbjct 215565 ATTGTCCTCCACGCAGGCGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAAT 215506 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || || || | || || | ||||| || ||||| || | |||||| || || | Sbjct 215505 CGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTG 215446 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | | |||||| ||| ||| ||| |||| | | | ||||| || | Sbjct 215445 GTGGGATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATGGTGTCCGAAGACT 215386 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | || || || |||||||| | ||||| || ||||| ||||| Sbjct 215385 CAACTTCTAATGTAATAGTCTTGCCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805348807920