Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq25 82.4 6e-11
>seq25
Length=178929
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/229 (69%), Gaps = 8/229 (3%)
Strand=Plus/Minus
Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277
||||| | || || || ||||| || |||||| |||||||||| ||||||||||| ||
Sbjct 140988 GGGGACCTAGGACCAGTCTATGGCTTCCAATGGCGACATTTTGGGGCTGAATATGTAGAT 140929
Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT---AATTTA 20334
| || ||||| || | ||||| ||||| |||||| | |||||| || ||
Sbjct 140928 GCCGAAACGGATTATACAGGCAAGGGAGTCGATCAGTTACAAGAGGTTATTGACAAGTTG 140869
Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394
| || || || | || ||| | || ||||| | || ||||| | | ||| ||
Sbjct 140868 AGGAA---TAATCCGTATGATAGACGGATCATTTTGAGTGCGTGGAATCCGAGGGATTTG 140812
Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTT 20442
| |||||||| || || ||||||||| | ||| || ||||| |||
Sbjct 140811 AAACTTATGGCTTTACCGCCTTGTCATATG-TTTGCGCAGTTTTATGTT 140764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399175661295730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |