Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq25 82.4 6e-11 >seq25 Length=178929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| | || || || ||||| || |||||| |||||||||| ||||||||||| || Sbjct 140988 GGGGACCTAGGACCAGTCTATGGCTTCCAATGGCGACATTTTGGGGCTGAATATGTAGAT 140929 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT---AATTTA 20334 | || ||||| || | ||||| ||||| |||||| | |||||| || || Sbjct 140928 GCCGAAACGGATTATACAGGCAAGGGAGTCGATCAGTTACAAGAGGTTATTGACAAGTTG 140869 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 | || || || | || ||| | || ||||| | || ||||| | | ||| || Sbjct 140868 AGGAA---TAATCCGTATGATAGACGGATCATTTTGAGTGCGTGGAATCCGAGGGATTTG 140812 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTT 20442 | |||||||| || || ||||||||| | ||| || ||||| ||| Sbjct 140811 AAACTTATGGCTTTACCGCCTTGTCATATG-TTTGCGCAGTTTTATGTT 140764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175661295730