Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1406 129 5e-25 >seq1406 Length=252419 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||||||||||| || ||||| || ||| | ||| || | || ||| Sbjct 215542 ACCAAGTGCAAAGTGCTCTCCTTTTGGATGTTATAATCGCTGAGTGTACGGCCATCCTCC 215483 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || |||||||| ||||| |||||||| || || || | ||||||||| ||| Sbjct 215482 AATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGGATACCCTCCTTATCCTGG 215423 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | ||||| | ||| || || | ||||| |||||| Sbjct 215422 ATCTTTGACTTGACATTATCAATGGTGTCCGAAGACTCAACTTCTAATGTAATAGTCTTG 215363 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||| || ||||| ||||| Sbjct 215362 CCCGTCAAAGTCTTAACGAAGATCTGCAT 215334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066947125994