Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq843 264 1e-65 seq908 95.1 1e-14 >seq843 Length=104768 Score = 264 bits (292), Expect = 1e-65 Identities = 638/955 (67%), Gaps = 8/955 (1%) Strand=Plus/Minus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTAC 23084 ||| || | |||||| || || ||||| ||| || || |||||| || ||||| || | Sbjct 64023 CGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA-GTACTCGACGATTTCAGTGC 63965 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | | ||| | || || || | ||| | |||||||| ||||| ||||| | || Sbjct 63964 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 63905 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||| |||||| | || | || ||||| || | ||| | ||| | ||| | Sbjct 63904 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAA 63845 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | || || | | | || || ||| ||| || |||||| || | |||||| Sbjct 63844 GCTTTTGGGCTTTGATGC-TCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAAC 63786 Query 23264 GCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || || || ||| ||||||| ||| ||||||| || || | | | || ||||| | Sbjct 63785 GCTTCGAACTCGTCACCGTAGACA-TCGGCCAAACCAGGACACTCGTTAGGGCACATCAA 63727 Query 23323 ACTCCACATTGAG-TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 |||| | ||| | |||||||| || |||| || ||||| || ||||| ||||||| Sbjct 63726 TGTCCAG-TCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 63668 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || || ||||| || |||||||| || || ||||||| | || | || | Sbjct 63667 AGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACT 63608 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||| ||||| | ||| || || || || | ||| || | Sbjct 63607 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTAC 63548 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | || ||||| || || | ||| ||||||||| | ||||| ||||| || |||| |||| Sbjct 63547 CACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGT 63488 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 |||| ||| || || | | | || | || || | ||||||| | || Sbjct 63487 TGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAACATTGA 63428 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| || || || | || || ||||| ||||| || | |||||||| || | Sbjct 63427 GACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTCGTAAATAC 63368 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 | || ||||||||||| || | ||| | ||| || || || | ||| || | || | Sbjct 63367 CATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTG 63308 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | | || | ||| || || ||| |||||| || |||||| | ||||| | |||| Sbjct 63307 TGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGT 63248 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || |||||||| || || || ||||| ||||| || |||| || || ||||| |||| Sbjct 63247 AGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACACGCATAATCA 63188 Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 | | || || | ||| | ||| | | || |||||||| || | | | Sbjct 63187 TATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGG 63128 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || || || || || | |||||| || ||||| |||| || ||||| || || Sbjct 63127 TCTTGAAACCGAAGTATTGATAGTTGAAATCACGGTCGTAGACGATGGCGGAGTT 63073 >seq908 Length=77775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||| | |||||| | || || Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | ||||| || ||| | | || || Sbjct 44750 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCTCC 44809 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || || || || ||||| |||||||| | |||| | Sbjct 44810 CACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGCGC 44869 Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 || || || |||| ||| | | ||||| ||| ||| |||||||| ||| | | Sbjct 44870 TT--CAGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAAC 57863 | || ||| | || || || | || || || ||||||||||| || | | ||| ||| Sbjct 44928 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTATATCATGGAGCAAG 44987 Query 57864 GACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 || | | || || || ||||| || ||||| || Sbjct 44988 CACAAAAGACCTA-CCTCTTCAATGCCATCGAGAC 45021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 252/380 (66%), Gaps = 12/380 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAG 57971 |||||||| || ||| | || |||||| || | || || |||| || ||| | Sbjct 45091 AAGAAGGCTGATTGGGCTGTCCGATGGATCCAA---GACAAGGAGTCCACCTTTGCCCAA 45147 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | || | || |||||||| || || ||||| ||||| || || || | || Sbjct 45148 CGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATC 45207 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| |||||||||| ||||| ||| | || || || || ||||||| |||| || Sbjct 45208 TTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCC 45267 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA- 58150 || || ||||||||||| || || || || ||||| | | |||| |||| | || | Sbjct 45268 CGTGATGAGGGTCTCCACACCGACTTCGCATGCCT--TCTCTTCTCCCATT-TGAAGCAT 45324 Query 58151 -ACCGACGCGGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 || | || | ||| || || | | ||||||||||| || | ||| || | ||| Sbjct 45325 CGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 45384 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || || || || || | ||||| |||||| | ||||| | Sbjct 45385 TTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCAACCTGATGAAGCAA 45444 Query 58269 TACATTGAGTTTGTTGCCGA 58288 ||||||||||| || || || Sbjct 45445 TACATTGAGTTCGTCGCTGA 45464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756849454880