Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq843 264 1e-65
seq908 95.1 1e-14
>seq843
Length=104768
Score = 264 bits (292), Expect = 1e-65
Identities = 638/955 (67%), Gaps = 8/955 (1%)
Strand=Plus/Minus
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTAC 23084
||| || | |||||| || || ||||| ||| || || |||||| || ||||| || |
Sbjct 64023 CGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA-GTACTCGACGATTTCAGTGC 63965
Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144
| | ||| | || || || | ||| | |||||||| ||||| ||||| | ||
Sbjct 63964 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 63905
Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||||||| |||||| | || | || ||||| || | ||| | ||| | ||| |
Sbjct 63904 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGGATAGAGTACCAAA 63845
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| || || | | | || || ||| ||| || |||||| || | ||||||
Sbjct 63844 GCTTTTGGGCTTTGATGC-TCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAAC 63786
Query 23264 GCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
|| || || ||| ||||||| ||| ||||||| || || | | | || ||||| |
Sbjct 63785 GCTTCGAACTCGTCACCGTAGACA-TCGGCCAAACCAGGACACTCGTTAGGGCACATCAA 63727
Query 23323 ACTCCACATTGAG-TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
|||| | ||| | |||||||| || |||| || ||||| || ||||| |||||||
Sbjct 63726 TGTCCAG-TCGAGATTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 63668
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||| || || ||||| || |||||||| || || ||||||| | || | || |
Sbjct 63667 AGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTCTTTCGGAGGTCGAGGAACT 63608
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || || || || ||||| ||||| ||||| | ||| || || || || | ||| || |
Sbjct 63607 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTAC 63548
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| || ||||| || || | ||| ||||||||| | ||||| ||||| || |||| ||||
Sbjct 63547 CACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACGATTCCGT 63488
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
|||| ||| || || | | | || | || || | ||||||| | ||
Sbjct 63487 TGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGAACATTGA 63428
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| || || || | || || ||||| ||||| || | |||||||| || |
Sbjct 63427 GACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGTGTCGTAAATAC 63368
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
| || ||||||||||| || | ||| | ||| || || || | ||| || | || |
Sbjct 63367 CATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTG 63308
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
| | || | ||| || || ||| |||||| || |||||| | ||||| | ||||
Sbjct 63307 TGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGT 63248
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
| || |||||||| || || || ||||| ||||| || |||| || || ||||| ||||
Sbjct 63247 AGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACACGCATAATCA 63188
Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921
| | || || | ||| | ||| | | || |||||||| || | | |
Sbjct 63187 TATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGG 63128
Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
| || || || || || | |||||| || ||||| |||| || ||||| || ||
Sbjct 63127 TCTTGAAACCGAAGTATTGATAGTTGAAATCACGGTCGTAGACGATGGCGGAGTT 63073
>seq908
Length=77775
Score = 95.1 bits (104), Expect = 1e-14
Identities = 225/335 (67%), Gaps = 9/335 (3%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| ||||| || || ||||| | |||||| | || ||
Sbjct 44690 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 44749
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||| ||| | | ||||| || ||| | | || ||
Sbjct 44750 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAACGATGACGAGCGTTACTTCATCTCC 44809
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| || || || || ||||| |||||||| | |||| |
Sbjct 44810 CACGTCCTCGCTTTCTTCGCTGCCTCTGACGGGATTGTCAACGAGAACCTCCTCGAGCGC 44869
Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
|| || || |||| ||| | | ||||| ||| ||| |||||||| ||| | |
Sbjct 44870 TT--CAGCAGTGAAGTCCAAATCCCCGAGGCCCGATTCTTCTACGGATTCCAAATCATGA 44927
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-CAAC 57863
| || ||| | || || || | || || || ||||||||||| || | | ||| |||
Sbjct 44928 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTATATCATGGAGCAAG 44987
Query 57864 GACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898
|| | | || || || ||||| || ||||| ||
Sbjct 44988 CACAAAAGACCTA-CCTCTTCAATGCCATCGAGAC 45021
Score = 93.3 bits (102), Expect = 4e-14
Identities = 252/380 (66%), Gaps = 12/380 (3%)
Strand=Plus/Plus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAG 57971
|||||||| || ||| | || |||||| || | || || |||| || ||| |
Sbjct 45091 AAGAAGGCTGATTGGGCTGTCCGATGGATCCAA---GACAAGGAGTCCACCTTTGCCCAA 45147
Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031
| || | || |||||||| || || ||||| ||||| || || || | ||
Sbjct 45148 CGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCATC 45207
Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091
|| ||| |||||||||| ||||| ||| | || || || || ||||||| |||| ||
Sbjct 45208 TTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTCC 45267
Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA- 58150
|| || ||||||||||| || || || || ||||| | | |||| |||| | || |
Sbjct 45268 CGTGATGAGGGTCTCCACACCGACTTCGCATGCCT--TCTCTTCTCCCATT-TGAAGCAT 45324
Query 58151 -ACCGACGCGGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
|| | || | ||| || || | | ||||||||||| || | ||| || | |||
Sbjct 45325 CGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 45384
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | || || || || || || | ||||| |||||| | ||||| |
Sbjct 45385 TTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCAACCTGATGAAGCAA 45444
Query 58269 TACATTGAGTTTGTTGCCGA 58288
||||||||||| || || ||
Sbjct 45445 TACATTGAGTTCGTCGCTGA 45464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445756849454880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |