Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq25 107 4e-18 seq843 100 6e-16 >seq25 Length=178929 Score = 107 bits (118), Expect = 4e-18 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 ||| | |||||| ||| || || ||||| |||| | || || |||| | | || Sbjct 141057 ATAAAGATCTGGGACGGAAACGGATCGCGAGAATACCTCGATAGCGTAGGGCTTTCGCAT 140998 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 | || | || || | ||||| || || || ||||||||||| |||||||| |||||| Sbjct 140997 CGCGCGGTAGGGGACCTAGGACCAGTCTATGGCTTCCAATGGCGACATTTTGGGGCTGAA 140938 Query 35447 TATGATACCTG-TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACT 35505 |||| || || | |||||||| || ||||| | ||||| || ||| | | Sbjct 140937 TATG-TAGATGCCGAAACGGATTATACAGGCAAGGGAGTCGATCAGTT--ACAAGAGGTT 140881 Query 35506 AAAGAC--CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 | ||| |||| | ||||| |||||||| |||| ||| ||| || |||||||| Sbjct 140880 ATTGACAAGTTGAGGAATAATCCGTATGATAGACGGATCATTTTGAGTGCGTGGAATCCG 140821 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | |||| | | ||||||||| | || || || || ||| ||| || |||||||| Sbjct 140820 AGGGATTTGAAACTTATGGCTTTACCGCCTTGTCATATGTTTGCGCAGTTTTATGT 140765 >seq843 Length=104768 Score = 100 bits (110), Expect = 6e-16 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGC-CGCCTCCTTAAGAGTATCATAAATACC 94844 |||| || |||||| |||| || || || || | || |||| || || |||||||| Sbjct 63425 CCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAAC-GTGTCGTAAATACC 63367 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903 |||||||| || || | | | | | ||||||||| || |||||||| | |||| || Sbjct 63366 ATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGG-TG 63308 Query 94904 TTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCAT 94963 | ||| || || || ||||| || ||||| || || | || ||||| | | | Sbjct 63307 TGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGT 63248 Query 94964 ATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 | || || ||| ||| | ||| || |||||||| ||||| || ||||||||||||| Sbjct 63247 AGGTCTCGATGGCAGCCTCGATATCCTCACCGTGAATTCCGACCGCAACACGCATAATCA 63188 Query 95024 TGTCCTGAGGGCGCTC 95039 | | ||| || || || Sbjct 63187 TATGCTGTGGACGTTC 63172 Score = 84.2 bits (92), Expect = 4e-11 Identities = 119/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| |||| ||| |||||||| |||||||| | ||||| || || | ||| || Sbjct 63819 ACCCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATC 63760 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 || | ||||| ||||||| |||||||||| | ||| |||||| || Sbjct 63759 GGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGATTCTTTTCA----- 63705 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||||| ||| ||| ||||| Sbjct 63704 -ACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATC 63658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562268116870