Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq843 309 4e-79 >seq843 Length=104768 Score = 309 bits (342), Expect = 4e-79 Identities = 1157/1787 (65%), Gaps = 57/1787 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164 || || |||| || ||||||||||| || | || || | || || | || Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 ||| || ||| | || ||||||| || || |||| ||| ||||| | || | Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 ||||| | || || || ||||||||||| | || || | ||||| || | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | | ||| | | | | || || ||||| || |||||||||||||| Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | |||| ||| || || |||||| || || | |||| ||| ||| Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456 Query 62522 GTATGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 || | ||| | | ||| || | |||||| ||||||||| | ||| ||| Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTGACAC 64397 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 |||||| || || ||| ||| ||| ||| ||| || ||||||| Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTC-------GCCTCTAATGCACCGTAATAAATG 62693 | || | ||| || |||||| || || ||| ||| |||||| Sbjct 64336 GACCATGAATCTTTGC-------CAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATG 64284 Query 62694 GTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 || || || || | | || || | |||| || |||||| || || ||| | || Sbjct 64283 GTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AA 64226 Query 62753 GAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 ||| | || || || || | ||||||||||| | | | |||||||| || | || Sbjct 64225 GAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAAT 64166 Query 62812 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 | | |||| || || |||| || || || || | ||| ||||| ||||| | || Sbjct 64165 T-GCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTC 64107 Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-A 62928 |||| | |||| | || || | || || | || ||| || | | ||| | | Sbjct 64106 TTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCA 64047 Query 62929 CAAACAT--GTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 ||||| ||| | |||| ||||||| ||| || || || ||||||| | | | Sbjct 64046 TCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGC 63988 Query 62985 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 || || | | || |||||||| | || | ||| || || | ||| | ||| Sbjct 63987 ACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTG 63928 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 || |||||| ||| || |||||||| ||||| ||||| || | || || ||| | || Sbjct 63927 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTG 63868 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163 || || | || | | ||| | | | || || || | ||| | |||| | Sbjct 63867 AGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC 63812 Query 63164 TCTT----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || |||||| |||||| |||||||||||| || | |||| | |||| | Sbjct 63811 CCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAAC 63752 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCA 63276 |||||| || | || |||||||| | ||| | || || ||| || || |||| Sbjct 63751 CAGGACACTCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCA 63695 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | |||||||| |||||||| ||||| || ||||| | | | | ||||| |||| Sbjct 63694 TGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTC 63635 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || ||||||||| | | || ||| | ||||| || || | ||| | Sbjct 63634 CATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGA 63575 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | | ||||| || ||||| || || ||||| | ||||| |||||||| || Sbjct 63574 TGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGA 63515 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 ||||||| | ||| |||| || ||||| || | || || ||||||| |||||| | | Sbjct 63514 AAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGC 63455 Query 63517 CACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | | ||||| || | | |||| ||||| || || || || | || || || | Sbjct 63454 CGGTCGCACGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCAT 63397 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 ||||| ||||||||||| || || || || ||||| || || |||||| | || Sbjct 63396 GGCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAG 63337 Query 63635 AAAACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 || ||| || | || ||| | | | || || || || | ||| || || |||| Sbjct 63336 GAAGCAGGATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGT 63278 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CAT 63752 | || || |||| || | | ||||| ||||| || || | || |||||| || Sbjct 63277 GGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCAC 63218 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 | |||||||| || || |||||||| | ||| ||||| || | ||| Sbjct 63217 CG-TGAATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTC 63172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804106157920