Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq843 309 4e-79
>seq843
Length=104768
Score = 309 bits (342), Expect = 4e-79
Identities = 1157/1787 (65%), Gaps = 57/1787 (3%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
|||||||||||||| || || || | | ||||| |||||||||||||| || || |||
Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164
|| || |||| || ||||||||||| || | || || | || || | ||
Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816
Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | |
Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284
||| || ||| | || ||||||| || || |||| ||| ||||| | || |
Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696
Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
||||| | || || || ||||||||||| | || || | ||||| || | ||
Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| | | | ||| | | | | || || ||||| || ||||||||||||||
Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461
|| | || | |||| ||| || || |||||| || || | |||| ||| |||
Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516
Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| ||||||| || || || |||||||| || || | ||||| || | | |||
Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456
Query 62522 GTATGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580
|| | ||| | | ||| || | |||||| ||||||||| | ||| |||
Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTGACAC 64397
Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640
|||||| || || ||| ||| ||| ||| ||| || |||||||
Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337
Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTC-------GCCTCTAATGCACCGTAATAAATG 62693
| || | ||| || |||||| || || ||| ||| ||||||
Sbjct 64336 GACCATGAATCTTTGC-------CAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATG 64284
Query 62694 GTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752
|| || || || | | || || | |||| || |||||| || || ||| | ||
Sbjct 64283 GTCTCGAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AA 64226
Query 62753 GAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811
||| | || || || || | ||||||||||| | | | |||||||| || | ||
Sbjct 64225 GAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAAT 64166
Query 62812 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870
| | |||| || || |||| || || || || | ||| ||||| ||||| | ||
Sbjct 64165 T-GCTCTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTC 64107
Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATCGCCCATCTATT-A 62928
|||| | |||| | || || | || || | || ||| || | | ||| | |
Sbjct 64106 TTGACGACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCA 64047
Query 62929 CAAACAT--GTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984
||||| ||| | |||| ||||||| ||| || || || ||||||| | | |
Sbjct 64046 TCAACATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGC 63988
Query 62985 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043
|| || | | || |||||||| | || | ||| || || | ||| | |||
Sbjct 63987 ACAGTACTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTG 63928
Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103
|| |||||| ||| || |||||||| ||||| ||||| || | || || ||| | ||
Sbjct 63927 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTG 63868
Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163
|| || | || | | ||| | | | || || || | ||| | |||| |
Sbjct 63867 AGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC 63812
Query 63164 TCTT----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219
|| |||||| |||||| |||||||||||| || | |||| | |||| |
Sbjct 63811 CCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAAC 63752
Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCA 63276
|||||| || | || |||||||| | ||| | || || ||| || || ||||
Sbjct 63751 CAGGACACTCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCA 63695
Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336
| |||||||| |||||||| ||||| || ||||| | | | | ||||| ||||
Sbjct 63694 TGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTC 63635
Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396
| |||||| || ||||||||| | | || ||| | ||||| || || | ||| |
Sbjct 63634 CATGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGA 63575
Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456
|||| | | | ||||| || ||||| || || ||||| | ||||| |||||||| ||
Sbjct 63574 TGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGA 63515
Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516
||||||| | ||| |||| || ||||| || | || || ||||||| |||||| | |
Sbjct 63514 AAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGC 63455
Query 63517 CACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574
| | ||||| || | | |||| ||||| || || || || | || || || |
Sbjct 63454 CGGTCGCACGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCAT 63397
Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634
||||| ||||||||||| || || || || ||||| || || |||||| | ||
Sbjct 63396 GGCGCAAATCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAG 63337
Query 63635 AAAACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693
|| ||| || | || ||| | | | || || || || | ||| || || ||||
Sbjct 63336 GAAGCAGGATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGT 63278
Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CAT 63752
| || || |||| || | | ||||| ||||| || || | || |||||| ||
Sbjct 63277 GGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCAC 63218
Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799
| |||||||| || || |||||||| | ||| ||||| || | |||
Sbjct 63217 CG-TGAATTCCGACCGCAACACGCATAATCATATGCTGTGGACGTTC 63172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629804106157920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |