Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq843 89.7 5e-13
>seq843
Length=104768
Score = 89.7 bits (98), Expect = 5e-13
Identities = 185/273 (68%), Gaps = 8/273 (3%)
Strand=Plus/Minus
Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166
|| || ||||| | ||| ||||||||||| || | || || | | || || || |
Sbjct 63614 AGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 63555
Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226
|| | ||| || |||| || |||||| | ||||| || | | ||| | |||||| ||
Sbjct 63554 TTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACG 63495
Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282
|| || || || || ||||| |||||| ||||||| || | || || || |
Sbjct 63494 ATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGA 63435
Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342
|| || || | || || ||||| |||| ||||| || | ||||| ||||||||
Sbjct 63434 AC--ATTGAGA--CCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGT 63379
Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTAT 38375
|| | ||||| || || ||||| ||||| ||
Sbjct 63378 GTCGTAAATACCATCAATGCTGTCCTCCTTCAT 63346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468514761856160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |