Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq843 89.7 5e-13 >seq843 Length=104768 Score = 89.7 bits (98), Expect = 5e-13 Identities = 185/273 (68%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || ||||| | ||| ||||||||||| || | || || | | || || || | Sbjct 63614 AGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 63555 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | ||| || |||| || |||||| | ||||| || | | ||| | |||||| || Sbjct 63554 TTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTGAGCATAGGAACG 63495 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282 || || || || || ||||| |||||| ||||||| || | || || || | Sbjct 63494 ATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCACGGATTCTGTGA 63435 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342 || || || | || || ||||| |||| ||||| || | ||||| |||||||| Sbjct 63434 AC--ATTGAGA--CCGATACCACCAGCATTCTTTGAAATCATGGCGCAAATCTTTAACGT 63379 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || | ||||| || || ||||| ||||| || Sbjct 63378 GTCGTAAATACCATCAATGCTGTCCTCCTTCAT 63346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514761856160