Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq843 279 7e-70 >seq843 Length=104768 Score = 279 bits (308), Expect = 7e-70 Identities = 1150/1789 (64%), Gaps = 41/1789 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957 || || |||| || ||||||||||| || | || || | || || | || Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 64816 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 64815 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 64756 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 ||| || ||| | || ||||||| || || |||| ||| ||||| | || | Sbjct 64755 GATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGAT 64696 Query 65078 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 64695 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 64636 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 64635 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 64576 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 || | || | |||| ||| || || |||||| || || | |||| ||| ||| Sbjct 64575 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCC 64516 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 64515 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 64456 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 65373 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 64455 GTGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 64397 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433 ||| || || ||| ||| ||| ||| ||| || || |||| Sbjct 64396 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATG 64337 Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 65493 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 64336 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 64277 Query 65494 AGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 65552 | || | | || || | |||| || ||| || || || ||| | ||||| | Sbjct 64276 AAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCCAA 64219 Query 65553 -AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 64218 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 64160 Query 65612 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670 ||| || || |||| || || || || | ||| ||||| ||||| | || |||| | Sbjct 64159 TTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGACGA 64100 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----CGCTCATCTATTACAAAC 65726 |||| | || || | || || | || ||| | || || ||| | | | Sbjct 64099 CAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAACAT 64040 Query 65727 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 65783 | ||| | |||| ||||||| ||| ||||| || ||||||| | | | || || Sbjct 64039 AGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAGTAC 63981 Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 | | || |||||||| | || | |||||| || | ||| | ||| || ||| Sbjct 63980 TCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 63921 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 65903 ||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 63920 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 63861 Query 65904 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT-- 65960 | || | | ||| | | | || || || | ||| | ||| | || Sbjct 63860 AGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCCTCAGAC 63804 Query 65961 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 66020 |||||| |||||| |||||||||||| || | |||| | |||| |||||||| Sbjct 63803 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 63744 Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---CACTCGTTTCATAAAGAGA 66077 || | || |||||||| | ||| | || || ||| || || ||||| |||||| Sbjct 63743 TCGTTAGGGCACATCAATGTCCAGT---CGAGATTCTTTTCAACACGCTTCATGAAGAGA 63687 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 || |||||||| ||||| || | ||| | || | | ||||| ||||| ||| Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 ||| || ||||||||| | | || ||| ||||| || || | ||| ||||| | | Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | ||||| || ||||| || || ||||| | ||||| |||||||| || ||||||| Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 | ||| |||| || || ||||| | || || || |||| |||||| || | ||| Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447 Query 66318 CGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375 || || | | |||| ||||| || || || || | || || || | ||||| Sbjct 63446 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAA 63389 Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 66435 |||||||| || || || || || || || || ||| |||||| | || || ||| Sbjct 63388 TCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 63329 Query 66436 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 63328 ATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAG 63270 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAAT 66553 |||| || | | ||||| ||||| || || | || |||||| || | ||||| Sbjct 63269 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAAT 63211 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 66602 ||| || || |||||||| | ||| ||||| || | ||| ||||||| Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTG 63162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158698647760