Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq908 84.2 2e-11 >seq908 Length=77775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 273/422 (65%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | ||||| || |||||||| || || | || ||| || || || |||| Sbjct 45147 ACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCCTCCAT 45206 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||||||| |||||| | || | | || ||||||||| |||| Sbjct 45207 CTTCTGGTTGAAGAAACGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTGATCTC 45266 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACA- 22918 |||||| || ||||| ||| ||||| || || | || || || || || || Sbjct 45267 CCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCATTTG--AAGCAT 45324 Query 22919 -AACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977 || | ||| | | || |||| | || || ||||| |||||| | Sbjct 45325 CGCCCAAGCAAGGCTGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 45384 Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037 ||||| ||||| || | || || || ||||| || |||| | Sbjct 45385 TTCTTGACTGAGGCTCTTCCTTGTGCACTTCTCGGCATGAACGCCAACCTGATGAAGCAA 45444 Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097 ||||| |||| || || ||||| || ||| | |||| || ||| ||| | || || Sbjct 45445 TACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTTTACAAG 45504 Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTT 23157 |||||||| ||||| || || ||||| ||||| | ||| || || || |||||||| Sbjct 45505 GTTGCCAACCCATTCGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTCTTC 45564 Query 23158 GA 23159 || Sbjct 45565 GA 45566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226158502742