Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10-
27] 1,714 sequences; 68,152,485 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq843 257 2e-63
seq908 109 7e-19
>seq843
Length=104768
Score = 257 bits (284), Expect = 2e-63
Identities = 1315/2066 (64%), Gaps = 51/2066 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || |||||||| | || || || | ||||| ||||||||||| || || || |||
Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| || |||| || ||||||||||| || | || | | || || |||
Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 64815
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|| || ||||| || ||| |||||| ||||| || || | ||| |||||||| | | |
Sbjct 64814 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 64755
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
|| || ||| | || ||||||| || || |||| ||| ||||| | || | |
Sbjct 64754 ATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATG 64695
Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097
|||| | || || || ||||||||||| ||||| || | || || || | || |
Sbjct 64694 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 64635
Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157
|| | | | ||| | | | | || || || || || ||||| |||||||||
Sbjct 64634 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 64575
Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217
| | || | |||| ||| || || |||||| || || | |||| ||| |||
Sbjct 64574 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCCA 64515
Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277
| ||||||| || || || |||||||| || || | | ||| || | | |||
Sbjct 64514 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 64455
Query 71278 TGTGATCGGATTTTATCTTTTAGAGATT-CCCAATTCCAAAGATCCGATGGTACAACNNN 71336
||| ||| | | || | || | |||||| ||||||||| | ||| ||
Sbjct 64454 TGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACACC 64396
Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396
||| ||| || || ||| ||| || || |||||
Sbjct 64395 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGG 64336
Query 71397 TCCTTCTTT-TTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453
|| | | || | | | | || || | | || || | | |||||||| ||
Sbjct 64335 ACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTCTC 64279
Query 71454 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512
|||||| | | ||||| | |||| || |||||| || || ||| | |||||
Sbjct 64278 GAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCC 64221
Query 71513 TA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571
| || || || || | |||||||| || | | | ||||||||||| | ||| |
Sbjct 64220 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 64162
Query 71572 ATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630
|||| || || |||| || || || || | ||| ||||| ||||| | || ||||
Sbjct 64161 CTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 64102
Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA----TCTATTACAA 71686
| |||| | || || | || || | || ||| | | | ||| | |
Sbjct 64101 GACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAAC 64042
Query 71687 ACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744
| | ||| || |||| ||||||| ||| ||||| || ||||||| | | ||
Sbjct 64041 ATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTA 63982
Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804
| | ||||||||||| | || | |||||| || | ||| | ||| || ||
Sbjct 63981 CTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCT 63922
Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864
|||| ||| || |||||||| ||||| || || || | || || ||| | |||| ||
Sbjct 63921 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTC 63862
Query 71865 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC-TCTT- 71922
| || | | ||| | | | || || || | |||| | ||| | ||
Sbjct 63861 AAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCCTCAGA 63805
Query 71923 -TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981
||||||| ||| || |||||||||||| || | ||| | | || ||||||||
Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745
Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039
|| || || |||||||||| ||| || || || ||| || || ||||| ||||||
Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGTCGAGAT--TCTTTTCAACACGCTTCATGAAGAGA 63687
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
|| |||||||| ||||| || ||||| | || | | |||||| ||||| |||
Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | |
Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567
Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219
| || || || ||||| || || ||||| | ||||| |||||||| || |||||||
Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507
Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279
| ||| |||| || || ||||| || || || |||| |||||| || | |||
Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447
Query 72280 CGAATATTGCTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337
|| || || | |||| ||||| || || || || | || || || | |||||
Sbjct 63446 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAA 63389
Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397
|||||||| || || || || || || || || ||| |||||| | || || |||
Sbjct 63388 TCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 63329
Query 72398 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
|| | || ||| | | || || || || | ||| || || ||||| || ||
Sbjct 63328 ATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAG 63270
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTAT 72515
|||| |||| | ||||| ||||| || || | || |||||| || | || ||
Sbjct 63269 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAAT 63211
Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575
||| ||||| |||||||| | ||||||||| || | ||| ||||||| || |
Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCG 63151
Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 72633
| | || ||| || | || || ||||| || || | || ||||| || ||
Sbjct 63150 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAA--TCACGG 63093
Query 72634 TCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGAT 72692
||||| | || | || ||||| | ||| | || |||| ||| ||| | |
Sbjct 63092 TCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATAACACAATCGTATGTT--T 63035
Query 72693 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751
||| || || || || | || ||| |||||| ||||||| | |||| ||
Sbjct 63034 GTTTGCTGATCATGGGTGACAATCTCTTGTTTCGAGGATTGACATAGTGGTATAATTCGG 62975
Query 72752 CCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810
|| || | | | ||| | || || |||| |||||| || || || || || |||||
Sbjct 62974 AGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACTGCAATTCTT 62916
Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836
|| || || ||||||||||| |||||
Sbjct 62915 GCTGCGAGGATGGCATAATCGGGATG 62890
>seq908
Length=77775
Score = 109 bits (120), Expect = 7e-19
Identities = 288/440 (65%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||| | ||||| || ||||| || || |||||||| | | || || ||
Sbjct 45590 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTC 45531
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
||||| || || || || |||| ||| || |||| || | | || | | |
Sbjct 45530 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 45471
Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953
| | ||| |||| ||| || || ||| ||||||| | ||||| || | ||||
Sbjct 45470 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGT 45411
Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013
| ||||||||| |||| | || ||||| ||||| || || || || || |
Sbjct 45410 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 45351
Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073
| |||| | | || || ||| | ||||| || | | ||||||||
Sbjct 45350 GCCTGGACTGCAGCCTTGCTTGGGCGATGCTTCAAATGGGAGAAGAGAAGGCATGCGAAG 45291
Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133
||| ||| ||||||||||| | || | |||||||| || || || || | |||
Sbjct 45290 TCGGTGTGGAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATG 45231
Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193
|||||||| || || | ||| || || || || || || ||| |||||||| || ||
Sbjct 45230 AGGCCACGTTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCA 45171
Query 42194 ACTGCCGCAAAGGCAATAAG 42213
|| || || ||||||| |||
Sbjct 45170 ACAGCGGCGAAGGCAACAAG 45151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671124820842640
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