Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20infarciens_20[genbank_20GCA_5F001414345.1_202015-10- 27] 1,714 sequences; 68,152,485 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq843 257 2e-63 seq908 109 7e-19 >seq843 Length=104768 Score = 257 bits (284), Expect = 2e-63 Identities = 1315/2066 (64%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||| | || || || | ||||| ||||||||||| || || || ||| Sbjct 64934 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 64875 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || |||| || ||||||||||| || | || | | || || ||| Sbjct 64874 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 64815 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || ||||| || ||| |||||| ||||| || || | ||| |||||||| | | | Sbjct 64814 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 64755 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||| | || ||||||| || || |||| ||| ||||| | || | | Sbjct 64754 ATGGTACGTTGCGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCCGGGATG 64695 Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 |||| | || || || ||||||||||| ||||| || | || || || | || | Sbjct 64694 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 64635 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | | ||| | | | | || || || || || ||||| ||||||||| Sbjct 64634 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 64575 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | |||| ||| || || |||||| || || | |||| ||| ||| Sbjct 64574 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTAAATCCA 64515 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||||||| || || || |||||||| || || | | ||| || | | ||| Sbjct 64514 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 64455 Query 71278 TGTGATCGGATTTTATCTTTTAGAGATT-CCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 64454 TGTTGAGAGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACACC 64396 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 ||| ||| || || ||| ||| || || ||||| Sbjct 64395 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATAAGTCTCATATGG 64336 Query 71397 TCCTTCTTT-TTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453 || | | || | | | | || || | | || || | | |||||||| || Sbjct 64335 ACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTCTC 64279 Query 71454 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512 |||||| | | ||||| | |||| || |||||| || || ||| | ||||| Sbjct 64278 GAAAATTTGGATGTTGAGGTGCTTG-GCCTCCGGGGATTCGAAAGGAAGACG-AAGAGCC 64221 Query 71513 TA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 | || || || || | |||||||| || | | | ||||||||||| | ||| | Sbjct 64220 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 64162 Query 71572 ATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 |||| || || |||| || || || || | ||| ||||| ||||| | || |||| Sbjct 64161 CTTTCTTGCCTCAGGAACCGGGTAGTAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 64102 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA----TCTATTACAA 71686 | |||| | || || | || || | || ||| | | | ||| | | Sbjct 64101 GACAACTTGGCAGACCTCGTGAAGCTTTTGGAAGTCATAAGTGGCGGTCTTCTCATCAAC 64042 Query 71687 ACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 | | ||| || |||| ||||||| ||| ||||| || ||||||| | | || Sbjct 64041 ATAGGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTA 63982 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 | | ||||||||||| | || | |||||| || | ||| | ||| || || Sbjct 63981 CTCGACGATTTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCT 63922 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| ||| || |||||||| ||||| || || || | || || ||| | |||| || Sbjct 63921 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTC 63862 Query 71865 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC-TCTT- 71922 | || | | ||| | | | || || || | |||| | ||| | || Sbjct 63861 AAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCCTCAGA 63805 Query 71923 -TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 ||||||| ||| || |||||||||||| || | ||| | | || |||||||| Sbjct 63804 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 63745 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || |||||||||| ||| || || || ||| || || ||||| |||||| Sbjct 63744 CTCGTTAGGGCACATCAATGTCCAGTCGAGAT--TCTTTTCAACACGCTTCATGAAGAGA 63687 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || |||||||| ||||| || ||||| | || | | |||||| ||||| ||| Sbjct 63686 TCTGGAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCATGGTTC 63627 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | | Sbjct 63626 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 63567 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || ||||| | ||||| |||||||| || ||||||| Sbjct 63566 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTG 63507 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || || ||||| || || || |||| |||||| || | ||| Sbjct 63506 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTAGTACCGGCGATATAAGCGCCGGTCGCA 63447 Query 72280 CGAATATTGCTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || || | |||| ||||| || || || || | || || || | ||||| Sbjct 63446 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCATTCTTTGAAATCATGGCGCAAA 63389 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 |||||||| || || || || || || || || ||| |||||| | || || ||| Sbjct 63388 TCTTTAACGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 63329 Query 72398 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 63328 ATGAAAGTT-GTGCCTGTGGTGTGCCAGCTGCGAAGAGGGTTGGGGAGGCGTGGGTGAAG 63270 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTAT 72515 |||| |||| | ||||| ||||| || || | || |||||| || | || || Sbjct 63269 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGAAT 63211 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 ||| ||||| |||||||| | ||||||||| || | ||| ||||||| || | Sbjct 63210 TCCGACCGCAACACGCATAATCATATGCTGTGGACGTTCGCAGATCTTGCCATCGAGGCG 63151 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 72633 | | || ||| || | || || ||||| || || | || ||||| || || Sbjct 63150 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGATAGTTGAAA--TCACGG 63093 Query 72634 TCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGAT 72692 ||||| | || | || ||||| | ||| | || |||| ||| ||| | | Sbjct 63092 TCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATAACACAATCGTATGTT--T 63035 Query 72693 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751 ||| || || || || | || ||| |||||| ||||||| | |||| || Sbjct 63034 GTTTGCTGATCATGGGTGACAATCTCTTGTTTCGAGGATTGACATAGTGGTATAATTCGG 62975 Query 72752 CCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 72810 || || | | | ||| | || || |||| |||||| || || || || || ||||| Sbjct 62974 AGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACTGCAATTCTT 62916 Query 72811 GCGGCTAGAATGGCATAATCTGGATG 72836 || || || ||||||||||| ||||| Sbjct 62915 GCTGCGAGGATGGCATAATCGGGATG 62890 >seq908 Length=77775 Score = 109 bits (120), Expect = 7e-19 Identities = 288/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| || ||||| || || |||||||| | | || || || Sbjct 45590 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTC 45531 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| || || || || |||| ||| || |||| || | | || | | | Sbjct 45530 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 45471 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| |||| ||| || || ||| ||||||| | ||||| || | |||| Sbjct 45470 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAGGTTGGCGTTCATGCCGAGAAGT 45411 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 45410 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 45351 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | |||| | | || || ||| | ||||| || | | |||||||| Sbjct 45350 GCCTGGACTGCAGCCTTGCTTGGGCGATGCTTCAAATGGGAGAAGAGAAGGCATGCGAAG 45291 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 ||| ||| ||||||||||| | || | |||||||| || || || || | ||| Sbjct 45290 TCGGTGTGGAGACCCTCATCACGGGAGATCAGCTCGTTGGAGAAGGTAAGACCAGCCATG 45231 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 |||||||| || || | ||| || || || || || || ||| |||||||| || || Sbjct 45230 AGGCCACGTTTCTTCAACCAGAAGATGGAGGCGAAAGAACCACTGAAGAAGATACCCTCA 45171 Query 42194 ACTGCCGCAAAGGCAATAAG 42213 || || || ||||||| ||| Sbjct 45170 ACAGCGGCGAAGGCAACAAG 45151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124820842640